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| Status |
Public on Jul 31, 2018 |
| Title |
Transcriptome analysis of the treeshrew infected with ZIKV GZ01 |
| Organism |
Tupaia chinensis |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We analyzed the gene expression profile of the PBMC from -2dpi, 2dpi, and 6dpi ZIKV-infected treeshrew
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| Overall design |
Two treeshreews (duplicated) infected with10^5 PFU of ZIKV(GZ01 strain) by the subcutaneous (s.c.) route. Peripheral blood mononuclear cells (PBMCs) from 0, 2 and 6 dpi (two for each group) were isolated using Ficoll-Hypaque and total RNA were extracted by RNeasy mini kit (Qiagen, German) for global transcriptome analysis.
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| Contributor(s) |
Zhang N, Zhang L, Deng Y, Feng Y, Ma F, Wang Q, Ye Q, Wang G, Dai J, Han Y, Sun X, Qi X, Xia X, Qin C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
May 30, 2018 |
| Last update date |
Jul 31, 2018 |
| Contact name |
feng ma |
| Organization name |
CAMS
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| Department |
Suzhou Institute of Systems Medicine
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| Lab |
MaF Lab
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| Street address |
218 Xinghu Street, B5-527
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| City |
Suzhou |
| State/province |
Jiangsu |
| ZIP/Postal code |
215123 |
| Country |
China |
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| Platforms (1) |
| GPL25059 |
Illumina HiSeq 2500 (Tupaia chinensis) |
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| Samples (6)
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| GSM3165056 |
RNA-Seq of Treeshrew ZIKV-infected PBMC -2dpi, 1 |
| GSM3165057 |
RNA-Seq of Treeshrew ZIKV-infected PBMC -2dpi, 2 |
| GSM3165058 |
RNA-Seq of Treeshrew ZIKV-infected PBMC +2dpi, 1 |
| GSM3165059 |
RNA-Seq of Treeshrew ZIKV-infected PBMC +2dpi, 2 |
| GSM3165060 |
RNA-Seq of Treeshrew ZIKV-infected PBMC +6dpi, 1 |
| GSM3165061 |
RNA-Seq of Treeshrew ZIKV-infected PBMC +6dpi, 2 |
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| Relations |
| BioProject |
PRJNA473782 |
| SRA |
SRP149343 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE115093_Treeshrew_RNA-Seq_FPKM.xlsx.gz |
2.4 Mb |
(ftp)(http) |
XLSX |
| GSE115093_gene.count.matrix.with_gene_annotation.xls.gz |
1.0 Mb |
(ftp)(http) |
XLS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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