|
| Status |
Public on Feb 01, 2019 |
| Title |
Arundo donax L. transcriptome under salt stress |
| Organism |
Arundo donax |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Arundo donax L. is one of the most promising bioenergy crop due to its high biomass yield and low irrigation requirement. The resistance to biotic and abiotic stress causes the high invasiveness of this plant which can grow with very low management input (e.g., pesticides, fertilization, irrigation) even in marginal lands or in fields irrigated with waste or salty water. Despite its economic importance, the A. donax genomic resources are still limited. In particular, no information on its transcriptional response to salt stress is available.We report the leaf transcriptome sequencing, de novo assembly and annotation of a giant reed genotype under two levels of salt stress. The study will be useful for providing insight into the molecular mechanism underlying its extreme adaptability also offering a platform for directing future efforts towards the genetic improvement of this species.
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| |
|
| Overall design |
Examination of A. donax genotype (namely, G2) under two levels of NaCl concentration (250 mM and 420 mM). The control samples is the genotype under 0 mM NaCl concentration. All the semples are in three biological replicates
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| |
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| Contributor(s) |
Sicilia A, Testa G, Santoro DF, Cosentino SL, Lo Piero AR |
| Citation(s) |
31416418 |
| |
| Submission date |
Oct 22, 2018 |
| Last update date |
Aug 27, 2019 |
| Contact name |
Angela Roberta Lo Piero |
| E-mail(s) |
rlopiero@unict.it
|
| Phone |
+39-0957580238
|
| Organization name |
University of Catania
|
| Department |
Di3A
|
| Lab |
Plant genetics
|
| Street address |
Via S. Sofia 98
|
| City |
Catania |
| State/province |
CT |
| ZIP/Postal code |
95123 |
| Country |
Italy |
| |
|
| Platforms (1) |
| GPL25702 |
Illumina HiSeq 2000 (Arundo donax) |
|
| Samples (9)
|
| GSM3439154 |
G2 genotype replicate 1 - no salt stress |
| GSM3439155 |
G2 genotype replicate 2 - no salt stress |
| GSM3439156 |
G2 genotype replicate 3 - no salt stress |
| GSM3439157 |
G2 genotype replicate 1 - severe salt stress |
| GSM3439158 |
G2 genotype replicate 2 - severe salt stress |
| GSM3439159 |
G2 genotype replicate 3 - severe salt stress |
| GSM3439160 |
G2 genotype replicate 1 - extreme salt stress |
| GSM3439161 |
G2 genotype replicate 2 - extreme salt stress |
| GSM3439162 |
G2 genotype replicate 3 - extreme salt stress |
|
| Relations |
| BioProject |
PRJNA497781 |
| SRA |
SRP166267 |
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