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GEO accession:
Series GSE135026
Query DataSets for GSE135026
Status
Public on Mar 25, 2020
Title
H3K79me2/3 controls enhancer promoter interactions and activation of the pan-cancer stem cell marker PROM1/CD133 in MLL-AF4 leukemia cells
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32242051
Submission date
Jul 29, 2019
Last update date
Jun 01, 2020
Contact name
Thomas A Milne
E-mail(s)
thomas.milne@imm.ox.ac.uk
Organization name
University of Oxford
Department
MRC Weatherall Institute of Molecular Medicine
Street address
John Radcliffe Hospital, Headington
City
Oxford
ZIP/Postal code
OX3 9DS
Country
United Kingdom
Platforms (2)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (28)
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More...
GSM3983874
SEM_RNA_Control_replicate_1
GSM3983875
SEM_RNA_Control_replicate_2
GSM3983876
SEM_RNA_Control_replicate_3
GSM3983877
SEM_RNA_PROM1_shRNA_KD_replicate_1
GSM3983878
SEM_RNA_PROM1_shRNA_KD_replicate_2
GSM3983879
SEM_RNA_PROM1_shRNA_KD_replicate_3
GSM3983880
H3K27me3 ChIP-seq in SEM cells
GSM3983881
ChIP seq Input for H3K27me3 in SEM cells
GSM3983882
H3K27me3 ChIP-seq in THP1 cells
GSM3983883
ChIP seq Input for H3K27me3 in THP1 cells
GSM3983884
EZH2 ChIP-seq in THP1 cells
GSM3983885
ChIP seq Input for EZH2 in THP1 cells
GSM3983886
H3K79me3 ChIP-seq in THP1 cells
GSM3983887
ChIP seq Input for H3K79me3 in THP1 cells
GSM3983888
H3K4me1 ChIP-seq in ML2 cells
GSM3983889
ChIP seq Input for H3K4me1 in ML2 cells
GSM3983890
H3K79me3 ChIP-seq in ALL primograft
GSM3983891
ChIP-seq Input for H3K79me3 in ALL primograft
GSM3983892
H3K27me3 ChIP-seq in RCH-ACV cells
GSM3983893
ChIP-seq Input for H3K27me3 in RCH-ACH cells
GSM3983894
EZH2 ChIP-seq in RCH-ACV cells
GSM3983895
H3K4me1 ChIP-seq in MLL-AF4 ALL patient blasts
GSM3983896
H3K4me3 ChIP-seq in MLL-AF4 ALL patient blasts
GSM3983897
H3K27ac ChIP-seq in MLL-AF4 ALL patient blasts
GSM3983898
H3K79me3 ChIP-seq in MLL-AF4 ALL patient blasts
GSM3983899
ChIP-seq Input in MLL-AF4 ALL patient blasts
GSM3983900
ATAC-seq in THP1 cells
GSM3983901
ATAC-seq in MLL-AF4 ALL patient blasts
This SuperSeries is composed of the following SubSeries:
GSE135023
H3K79me2/3 controls enhancer promoter interactions and activation of the pan-cancer stem cell marker PROM1/CD133 in MLL-AF4 leukemia cells (RNA-seq)
GSE135024
H3K79me2/3 controls enhancer promoter interactions and activation of the pan-cancer stem cell marker PROM1/CD133 in MLL-AF4 leukemia cells (ChIP-seq)
GSE135025
H3K79me2/3 controls enhancer promoter interactions and activation of the pan-cancer stem cell marker PROM1/CD133 in MLL-AF4 leukemia cells (ATAC-seq)
Relations
BioProject
PRJNA557180
Download family
Format
SOFT formatted family file(s)
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TXT
Supplementary file
Size
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File type/resource
GSE135026_RAW.tar
11.9 Mb
(http)
(custom)
TAR (of TXT)
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