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| Status |
Public on Aug 07, 2020 |
| Title |
HA-TFE3 bound regions in HK-2 HA-TFE3-inducible cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
TFE3 is a bHLH-ZIP transcription factor, which nuclear localization is regulated by a tumor suppressor FLCN. In order to analyze TFE3 occupancy in whole genome, we have generated and utilized a HK-2 HA-TFE3-inducible cell line which express HA-tagged TFE3 in a doxycycline-dependent manner. HA-TFE3 bound regions were determined by ChIPSeq.
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| Overall design |
We performed ChIP-seq analysis in duplicate with an antibody against HA-tag on a HK-2 HA-TFE3-inducible cell line.
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| Contributor(s) |
Baba M, Satou Y, Kubota Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Aug 07, 2019 |
| Last update date |
Aug 10, 2020 |
| Contact name |
Masaya Baba |
| Organization name |
Kumamoto University
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| Department |
International Research Center for Medical Sciences
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| Lab |
Baba Lab
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| Street address |
2-2-1 Honjo, Chuo-ku
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| City |
Kumamoto |
| State/province |
Kumamoto |
| ZIP/Postal code |
860-0811 |
| Country |
Japan |
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| Platforms (1) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA559085 |
| SRA |
SRP217680 |
