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| Status |
Public on Aug 25, 2020 |
| Title |
Transcriptome analysis of rice reveals the lncRNA-mRNA regulatory network in response to Rice black-streaked dwarf virus infection |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To better understand the response mechanism of rice plants to Rice black-streaked dwarf virus (RBSDV) infection, we performed a comparative transcriptome analysis between the RBSDV-infected and non-infected rice plants. A total of 1342 mRNAs and 22 lncRNAs were identified to be differentially expressed after RBSDV infection. Most differentially expressed transcripts involved in the plant-pathogen interaction pathway were upregulated after RBSDV infection, indicating the activation of rice defense response by RBSDV. A network of differentially expressed lncRNAs (DElncRNAs) and mRNAs (DEmRNAs) was then constructed. In this network, there are 56 plant-pathogen interaction-related DEmRNAs co-expressing with 20 DElncRNAs, suggesting these DElncRNAs and DEmRNAs may play essential roles in rice innate immunity against RBSDV.
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| Overall design |
a comparative transcriptome analysis between the RBSDV-infected and non-infected rice plants
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| Contributor(s) |
Zhang T, Liang Q, Wu J |
| Citation(s) |
32867233 |
| Submission date |
Aug 24, 2020 |
| Last update date |
Dec 16, 2020 |
| Contact name |
Tianze Zhang |
| E-mail(s) |
11416070@zju.edu.cn
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| Organization name |
State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University
|
| Street address |
Yuhangtang Road 866
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| City |
Hangzhou |
| ZIP/Postal code |
310058 |
| Country |
China |
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| Platforms (1) |
| GPL19290 |
Illumina HiSeq 2500 (Oryza sativa) |
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| Samples (6)
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| Relations |
| SRA |
SRP278002 |
| BioProject |
PRJNA658964 |
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