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Series GSE163269 Query DataSets for GSE163269
Status Public on Oct 29, 2022
Title RNA-Seq of injured mouse hearts depleted for myofibroblast Yap [I]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary A myofibroblast specific tamoxifen inducible Cre was used to assess the contribution of Yap in the mouse heart after myocardial infarction
 
Overall design We implemented a Cre-lox system whereby inducible Cre expressed under the myofibroblast specific Periostin promoter is crossed with Yap floxed animals, facilitating inducible depletion of Yap. Mice were siblings with floxed Yap alleles and either a copy of MerCreMer under the endogenous periostin promote or wildtype Periostin. Permenant ligation of the left anterior descending artery or sham surgeries were conducted. Mice were administered tamoxifen citrate diet ad libitum immediately after surgery to promote excession of myofibroblast yap and left ventricles were collected 4 days post injury.
 
Contributor(s) Flinn MA, O'Meara CC, Patterson M
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Submission date Dec 15, 2020
Last update date Oct 31, 2022
Contact name Michael Andrew Flinn
Organization name Medical College of Wisconsin
Department Physiology
Lab O'Meara Lab
Street address 8701 W Watertown Plank Rd
City Wauwatosa
State/province WI
ZIP/Postal code 53226
Country USA
 
Platforms (1)
GPL28457 DNBSEQ-G400 (Mus musculus)
Samples (12)
GSM4976338 Cre positive, MI surgery rep1
GSM4976339 Cre positive, MI surgery rep2
GSM4976340 Cre positive, MI surgery rep3
This SubSeries is part of SuperSeries:
GSE163617 RNA-seq of injured mouse hearts depleted for myofibroblast Yap or Yap and Wwtr1
Relations
BioProject PRJNA685438
SRA SRP298047

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163269_AllSamples.GeneExpression.FPKM.txt.gz 3.2 Mb (ftp)(http) TXT
GSE163269_Periostin_Sham-VS-Periostin_MI.DEseq2_Method.GeneDiffExp.txt.gz 3.5 Mb (ftp)(http) TXT
GSE163269_RAW.tar 29.5 Mb (http)(custom) TAR (of TXT)
GSE163269_wildtype_MI-VS-Periostin_MI.DEseq2_Method.GeneDiffExp.txt.gz 3.5 Mb (ftp)(http) TXT
GSE163269_wildtype_Sham-VS-Periostin_Sham.DEseq2_Method.GeneDiffExp.txt.gz 3.3 Mb (ftp)(http) TXT
GSE163269_wildtype_Sham-VS-wildtype_MI.DEseq2_Method.GeneDiffExp.txt.gz 3.5 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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