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| Status |
Public on Feb 01, 2024 |
| Title |
Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
Gene expression is known to vary among individuals, and this variability can impact the phenotypic diversity observed in natural populations. While the transcriptome and proteome have been extensively studied, little is known about the translation process itself. Here, we therefore performed ribosome and transcriptomic profiling on a genetically and ecologically diverse subset of natural isolates of the Saccharomyces cerevisiae yeast. Interestingly, we found that the Euclidean distances between each profile and the expression fold changes in each pairwise isolate comparison were approximately 10% higher at the transcriptomic level. This observation clearly indicates that the transcriptional variation observed in the different isolates is buffered through a phenomenon known as post-transcriptional buffering at the translation level. Furthermore, this phenomenon seemed to have a specific signature by preferentially affecting essential genes as well as genes involved in complex-forming proteins, and low transcribed genes. We also explored the translation of the S. cerevisiae pangenome and found that the accessory genes related to introgression events displayed similar transcription and translation levels as the core genome. By contrast, genes acquired through horizontal gene transfer events tended to be less efficiently translated. Together, our results highlight both the extant and signature of the post- transcriptional buffering.
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| Overall design |
Ribosome profiling and RNA-seq of eight natural Saccharomyces cerevisiae isolates
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| |
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| Contributor(s) |
Teyssonniere EM, Shichino Y, Friedrich A, Iwasaki S, Schacherer J |
| Citation(s) |
38261993 |
| Submission date |
Apr 30, 2021 |
| Last update date |
Apr 02, 2024 |
| Contact name |
Shintaro Iwasaki |
| E-mail(s) |
shintaro.iwasaki@riken.jp
|
| Organization name |
RIKEN
|
| Department |
Center for Pioneering Research
|
| Lab |
RNA Systems Biochemistry Laboratory
|
| Street address |
2-1, Hirosawa
|
| City |
Wako |
| State/province |
Saitama |
| ZIP/Postal code |
3510198 |
| Country |
Japan |
| |
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| Platforms (1) |
| GPL26171 |
HiSeq X Ten (Saccharomyces cerevisiae) |
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| Samples (32)
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| Relations |
| BioProject |
PRJNA726548 |
| SRA |
SRP318024 |
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