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Series GSE175476 Query DataSets for GSE175476
Status Public on Aug 06, 2021
Title Antibiotics exposure impacts the gut microbiota and influences energy and metabolic homeostasis in Spodoptera frugiperda
Organisms Spodoptera frugiperda; insect gut metagenome
Experiment type Expression profiling by high throughput sequencing
Other
Summary Insect gut microbiota plays important roles in acquiring nutrition, preventing pathogens infection, immune responses, and communicating with the environment. Gut microbiota can be affected by some external factors such as foods, temperature, and antibiotics. Spodoptera frugiperda (Lepidoptera: Noctuidae) is an important destructive pest of grain crops all over the world. The function of gut microbiota in S. frugiperda remains to be investigated. In this study, we fed the S. frugiperda with the antibiotic mixture (penicillin, gentamicin, rifampicin, and streptomycin) to perturb the gut microbiota, and further examined the effect of dysbiosis in gut microbiota on the gene expression of S. frugiperda by RNA sequencing. We found the composition and diversity of the gut bacterial community were changed in S. frugiperda after antibiotics treatmen, and the expression of genes related to energy and metabolic process were affected after antibiotics exposure in S. frugiperda. Our work will help understand the role of gut microbiota in insects.
 
Overall design Spodoptera frugiperda were reared with the artificial diet with or without antibiotics, respectively from the newly hatched larvae to the 3-day-old sixth instar larvae. RNA-seq and 16S rDNA of midguts were performed to study the effects of gut microflora on host transcription.
 
Contributor(s) Chen Y, Zhou H, Lai Y, Wang X
Citation(s) 34659154
Submission date May 24, 2021
Last update date Apr 20, 2022
Contact name Xiaoyun Wang
E-mail(s) wang_xiaoyun@gibh.ac.cn
Organization name Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences
Department Infection and Immunity
Street address 190 Kaiyuan Avenue, Huangpu
City Guangzhou
State/province Guangdong
ZIP/Postal code 510530
Country China
 
Platforms (2)
GPL29193 Illumina NovaSeq 6000 (Spodoptera frugiperda)
GPL30191 Illumina NovaSeq 6000 (insect gut metagenome; Spodoptera frugiperda)
Samples (12)
GSM5335133 Control-1_RNA
GSM5335134 Control-2_RNA
GSM5335135 Control-3_RNA
Relations
BioProject PRJNA732454
SRA SRP321194

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE175476_16S-seq_OTU_counts_taxonomy.txt.gz 43.8 Kb (ftp)(http) TXT
GSE175476_RNA-seq_gene_counts.txt.gz 223.0 Kb (ftp)(http) TXT
GSE175476_RNA-seq_gene_sequences.fa.gz 85.3 Mb (ftp)(http) FA
Raw data are available in SRA
Processed data are available on Series record

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