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Series GSE182076 Query DataSets for GSE182076
Status Public on Aug 17, 2021
Title HOXB8 counteracts MAPK/ERK oncogenic signaling in a chicken embryo model of neoplasia
Organism Gallus gallus
Experiment type Expression profiling by high throughput sequencing
Summary HOX transcription factors are members of an evolutionarily conserved family of proteins required for the establishment of the anteroposterior body axis during bilaterian development. Although they are often deregulated in cancers, the molecular mechanisms by which they act as oncogenes or tumor suppressor genes are only partially understood. Since the MAPK/ERK signaling pathway is deregulated in most cancers, we aimed at apprehending if and how Hox proteins interact with ERK oncogenicity. Using an in vivo neoplasia model in the chicken embryo that we have developed, consisting in the overactivation of the ERK1/2 kinases in the trunk neural tube, we analyzed the consequences of HOXB8 gain of function at morphological and transcriptional level in this model. We found that HOXB8 acts as a tumor suppressor, counteracting ERK-induced neoplasia. HOXB8 tumor suppressor function in this model relies on a large reversion of the oncogenic transcriptome induced by ERK. In addition to showing that HOXB8 protein controls the transcriptional responsiveness to ERK oncogenic signaling, our study identified new downstream targets of ERK oncogenic activation in an in vivo context that could provide clues for therapeutic strategies.
 
Overall design Neural tube in ovo electroporations were performed at HH11. Two pCIG controls, two pCIG-MEK1ca, two pCIG-HoxB8 and two pCIG-MEK1ca+pCIG-HoxB8 experiments were performed. GFP-expressing cells were FACS-isolated and total polyA RNA sequenced.
 
Contributor(s) Wilmerding A, Bouteille L, Rinaldi L, Caruso N, Graba Y, Delfini M
Citation(s) 34445617
Submission date Aug 13, 2021
Last update date Aug 31, 2021
Contact name Marie-Claire DELFINI
E-mail(s) marieclaire.delfini@gmail.com
Phone 0611942586
Organization name IBDM / CNRS
Lab IBDM
Street address Campus de Luminy
City Marseille
ZIP/Postal code 13009
Country France
 
Platforms (1)
GPL16133 Illumina HiSeq 2000 (Gallus gallus)
Samples (6)
GSM5517754 pCIG-MEK1ca+pCIG-HoxB8 Replicate 1
GSM5517755 pCIG-MEK1ca+pCIG-HoxB8 Replicate 2
GSM5517756 pCIG-MEK1ca Replicate 1 (reanalysis)
Relations
BioProject PRJNA754408
SRA SRP332469

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE182076_DGE_MEK1ca_HoxB8_vs_MEK1ca_Galgal4_ensembl85_FDR1_logFC_ordered_13_08_21.xlsx 301.7 Kb (ftp)(http) XLSX
GSE182076_DGE_MEK1ca_vs_pCIG_Galgal4_ensembl85_FDR1_logFC_ordered_13_08_21.xlsx 172.6 Kb (ftp)(http) XLSX
GSE182076_gene_counts.xlsx 2.6 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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