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| Status |
Public on Sep 20, 2021 |
| Title |
Studies of autophagy pathway during submergence in Arabidopsis thaliana |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
Autophagy involves massive degradation of intracellular components and functions as a conserved system that helps cells to adapt to adverse conditions. In Arabidopsis thaliana, submergence induces the transcription of autophagy-related (ATG) genes and the formation of autophagosomes. To study the role of autophagy during submergence, we performed transcriptome analysis with atg5, an autophagy-defective mutant, under submergence conditions. Our data showed that submergence changed the expression profile of DEG in the atg5 versus wild-type.
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| Overall design |
Whole Arabidopsis plants (4-week-old) were gently submerged at depths of 10 cm beneath the water surface under normal light/dark cycle condition. Plant samples for microarray were collected after 0 h or 48 h submergence treatment.
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| Contributor(s) |
Chen L, Yang M |
| Citation missing |
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| Submission date |
Sep 17, 2021 |
| Last update date |
Sep 21, 2021 |
| Contact name |
mk yang |
| E-mail(s) |
yangmk@stu.scau.edu.cn
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| Organization name |
scau
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| Street address |
wushan
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| City |
guangzhou |
| ZIP/Postal code |
510642 |
| Country |
China |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA764178 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE184340_RAW.tar |
21.8 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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