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| Status |
Public on Feb 28, 2010 |
| Title |
Genome-wide analysis of alternative splicing evolution among Mus subspecies |
| Organisms |
Mus musculus castaneus; Mus musculus domesticus; Mus spretus; Mus musculus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We studied the evolution of alternative splicing in the early stages of species divergence in the house mouse.
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| |
|
| Overall design |
We sequenced the testis transcriptomes of three Mus musculus subspecies and Mus spretus using Illumina technology. On the basis of a genome-wide analysis of read coverage differences among subspecies, we identified several hundred candidate alternatively spliced regions.
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| |
|
| Contributor(s) |
Harr B, Turner LM |
| Citation(s) |
20331782 |
| Submission date |
Nov 05, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Bettina Harr |
| E-mail(s) |
harr@evolbio.mpg.de
|
| Organization name |
Max-Planck-Institute for Evolutionary Biology
|
| Lab |
Evolutionary Genetics
|
| Street address |
August-Thienemannstrasse 2
|
| City |
Ploen |
| ZIP/Postal code |
24306 |
| Country |
Germany |
| |
|
| Platforms (4)
|
| GPL9535 |
Illumina Genome Analyzer II (Mus musculus castaneus) |
| GPL9536 |
Illumina Genome Analyzer II (Mus musculus domesticus) |
| GPL9537 |
Illumina Genome Analyzer II (Mus musculus musculus) |
| GPL9538 |
Illumina Genome Analyzer II (Mus spretus) |
|
| Samples (7)
|
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| Relations |
| SRA |
SRP002073 |
| BioProject |
PRJNA121315 |
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