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GEO accession:
Series GSE195905
Query DataSets for GSE195905
Status
Public on Jan 19, 2023
Title
Characterization of dynamic p300 enhancers in murine cardiomyocyte development
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://www.cell.com/developmental-cell/pdf/S1534-5807(23)00136-3.pdf
Citation(s)
37071996
Submission date
Feb 01, 2022
Last update date
Jul 11, 2023
Contact name
Pingzhu Zhou
E-mail(s)
ping-zhu.zhou@childrens.harvard.edu
Organization name
Boston Children's Hospital
Department
Cardiology
Lab
William Pu
Street address
320 Longwood Ave
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (3)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (48)
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GSM5827498
Purified Cardiomyocyte-E12.5_rep1
GSM5827499
Purified Cardiomyocyte-E12.5_rep2
GSM5827500
Purified Cardiomyocyte-E12.5_rep3
GSM5827501
Purified Cardiomyocyte-P0_rep1
GSM5827502
Purified Cardiomyocyte-P0_rep2
GSM5827503
Purified Cardiomyocyte-P0_rep3
GSM5827504
Purified Cardiomyocyte-P42_rep1
GSM5827505
Purified Cardiomyocyte-P42_rep2
GSM5827506
Purified Cardiomyocyte-P42_rep3
GSM5856137
E12.5_CM_p300_bioChIP-seq_rep1
GSM5856138
E12.5_CM_p300_bioChIP-seq_rep2
GSM5856139
E16.5_CM_p300_bioChIP-seq_rep1
GSM5856140
E16.5_CM_p300_bioChIP-seq_rep2
GSM5856141
P0_CM_p300_bioChIP-seq_rep1
GSM5856142
P0_CM_p300_bioChIP-seq_rep2
GSM5856143
P7_CM_p300_bioChIP-seq_rep1
GSM5856144
P7_CM_p300_bioChIP-seq_rep2
GSM5856145
P14_CM_p300_bioChIP-seq_rep1
GSM5856146
P14_CM_p300_bioChIP-seq_rep2
GSM5856147
P28_CM_p300_bioChIP-seq_rep1
GSM5856148
P28_CM_p300_bioChIP-seq_rep2
GSM5856149
P42_CM_p300_bioChIP-seq_rep1
GSM5856150
P42_CM_p300_bioChIP-seq_rep2
GSM5856151
E12.5_CM_p300_RNA-seq_rep1
GSM5856152
E12.5_CM_p300_RNA-seq_rep2
GSM5856153
E12.5_CM_p300_RNA-seq_rep3
GSM5856154
E16.5_CM_p300_RNA-seq_rep1
GSM5856155
E16.5_CM_p300_RNA-seq_rep2
GSM5856156
E16.5_CM_p300_RNA-seq_rep3
GSM5856157
P0_CM_p300_RNA-seq_rep1
GSM5856158
P0_CM_p300_RNA-seq_rep2
GSM5856159
P0_CM_p300_RNA-seq_rep3
GSM5856160
P7_CM_p300_RNA-seq_rep1
GSM5856161
P7_CM_p300_RNA-seq_rep2
GSM5856162
P7_CM_p300_RNA-seq_rep3
GSM5856163
P14_CM_p300_RNA-seq_rep1
GSM5856164
P14_CM_p300_RNA-seq_rep2
GSM5856165
P14_CM_p300_RNA-seq_rep3
GSM5856166
P28_CM_p300_RNA-seq_rep1
GSM5856167
P28_CM_p300_RNA-seq_rep2
GSM5856168
P28_CM_p300_RNA-seq_rep3
GSM5856169
P42_CM_p300_RNA-seq_rep1
GSM5856170
P42_CM_p300_RNA-seq_rep2
GSM5856171
P42_CM_p300_RNA-seq_rep3
GSM6916794
Purified Cardiomyocyte-E12.5_rep1
GSM6916795
Purified Cardiomyocyte-E12.5_rep2
GSM6916796
Purified Cardiomyocyte-P42_rep1
GSM6916797
Purified Cardiomyocyte-P42_rep2
This SuperSeries is composed of the following SubSeries:
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GSE194087
Characterization of dynamic p300 enhancers in murine cardiomyocyte development [HiC]
GSE195901
Characterization of dynamic p300 enhancers in murine cardiomyocyte development [ChIP-seq]
GSE195902
Characterization of dynamic p300 enhancers in murine cardiomyocyte development [RNA-seq]
GSE196346
Characterization of maturational enhancer activity by massively parallel reporter assay [amplicon-Seq]
GSE222160
Characterization the crosstalk between P300 enhancers and 3D genome in murine cardiomyocyte development and maturation by H3K27ac HiChIP.
Relations
BioProject
PRJNA802575
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Format
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TXT
Supplementary file
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File type/resource
GSE195905_RAW.tar
3.6 Mb
(http)
(custom)
TAR (of TXT)
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