 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 14, 2023 |
| Title |
MGA-seq is an efficient tool for genetic variants and extrachromosomal DNA detection in cancer cell [Nanopore] |
| Organism |
Homo sapiens |
| Experiment type |
Other
|
| Summary |
We developed MGA-seq for detecting both chromatin spatial contacts and WGS information at the same time in clinical samples, then we combine the two kind of information to detecte small variation, large structural variation, homogenously staining regions, and extrachromosomal DNA.
|
| |
|
| Overall design |
Nanopore
|
| |
|
| Contributor(s) |
Lin D, Zou Y |
| Citation(s) |
37904244 |
| Submission date |
Jun 01, 2022 |
| Last update date |
Nov 16, 2023 |
| Contact name |
zou yanyan |
| E-mail(s) |
yyzou0721@outlook.com
|
| Organization name |
HZAU
|
| Street address |
SHIZISHAN
|
| City |
WuHan |
| ZIP/Postal code |
430070 |
| Country |
China |
| |
|
| Platforms (1) |
|
| Samples (1) |
|
| This SubSeries is part of SuperSeries: |
| GSE205293 |
MGA-seq is an efficient tool for genetic variants and extrachromosomal DNA detection in cancer cell |
|
| Relations |
| BioProject |
PRJNA844337 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE205289_RAW.tar |
34.5 Mb |
(http)(custom) |
TAR (of VCF) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
