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Series GSE206614 Query DataSets for GSE206614
Status Public on Apr 06, 2023
Title A loss-of-function mutation in human Oxidation Resistance 1 disrupts the spatial-temporal regulation of histone arginine methylation in neurodevelopment
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report a loss-of-function mutation in the TLDc domain of human Oxidation Resistance 1 (OXR1) gene, resulting in early-onset epilepsy, developmental delay, cognitive disabilities, and cerebellar atrophy. Patient lymphoblasts show impaired cell survival, proliferation, and hypersensitivity to oxidative stress. These phenotypes are rescued by TLDc domain replacement. We generated patient derived induced pluripotent stem cells (iPSCs) revealing impaired neural differentiation along with dysregulation of genes essential for neurodevelopment. We identified that OXR1 influences histone arginine methylation by activating protein arginine methyltransferases (PRMTs), suggesting OXR1 dependent mechanisms regulating gene expression during neurodevelopment. We modeled the function of OXR1 in early human brain development using patient derived brain organoids revealing that OXR1 contributes to the spatial-temporal regulation of histone arginine methylation in specific brain regions. Our work provides new insights into pathological features and molecular underpinnings associated with OXR1 deficiency, highlighting the therapeutic potential of OXR1 in numerous neurodegenerative and neurodevelopmental disorders.
 
Overall design We generated patient derived induced pluripotent stem cells (iPSCs) and performed neural differentiation assay. Three clones of control and the patient were used. The samples were collected at the stages of iPSCs, neural aggregates (NAs) and neurons(Neu), respectively.
 
Contributor(s) Lin X, Pannone M, Wang W, Yang M, Kristiansen E, Edvardson S, Ye J, Bjørås M
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Submission date Jun 21, 2022
Last update date Jun 29, 2023
Contact name Magnar Bjørås
E-mail(s) magnar.bjoras@ntnu.no
Organization name Faculty of Medicine and Health Sciences,NTNU
Department Department of Clinical and Molecular Medicine (IKOM)
Lab M.Bjørås´s Lab
Street address Erling Skjalgssonsgate 1
City Trondheim
ZIP/Postal code 7030
Country Norway
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (18)
GSM6258155 Human AG05836B C15 p21
GSM6258156 Human AG05836B C10 p20
GSM6258157 Human AG05836B C1 p22
Relations
BioProject PRJNA851462

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Supplementary file Size Download File type/resource
GSE206614_count_matrix.txt.gz 5.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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