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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 05, 2022 |
| Title |
Synertistic effects of Arid1a inactivation and oncogenic Kras mutation on chromatin accessbility in mouse embryonic cells (MEFs) |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
To explore mechanisms underlying the cooperative effect in the proliferative phenotype, we harvest MEFs of different genotypes (KA, K, A, WT) recombined and un-recombined.
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| Overall design |
Differential chromatin accesbility analysis of ATAC-seq data for recombined WT, A, K and KA MEFs
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| Contributor(s) |
Bing G, Friedland SC |
| Citation(s) |
36044839 |
| Submission date |
Jul 11, 2022 |
| Last update date |
Sep 05, 2022 |
| Contact name |
Aram F. Hezel |
| E-mail(s) |
aram_hezel@urmc.rochester.edu
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| Organization name |
University of Rochester Medical Center
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| Department |
Wilmot Cancer Institute
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| Lab |
Hezel Lab
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| Street address |
300 Elmwood Avenue
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| City |
Rochester |
| State/province |
NY |
| ZIP/Postal code |
14642 |
| Country |
USA |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE207895 |
Synergistic effects of Arid1a inactivation and oncogenic Kras mutation in mouse embryonic cells |
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| Relations |
| BioProject |
PRJNA857592 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE207888_deSeq2_NormCounts_MEF_ATACseq.txt.gz |
3.0 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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