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Series GSE208403 Query DataSets for GSE208403
Status Public on Oct 03, 2023
Title Statistical learning quantifies transposable element-mediated cis-regulation
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary KLF4 and ZNF611 ChIP-seq when overexpressed in primed or in naive respectively
 
Overall design ChIP-seq and ATAC-seq in Naive Human embryonic stem cells
 
Contributor(s) Pulver C, Pontis J, Duc J
Citation(s) 37950299
Submission date Jul 18, 2022
Last update date Dec 01, 2023
Contact name Julien Duc
E-mail(s) julien.duc@epfl.ch
Organization name EPFL
Department School of Life Science
Lab LVG
Street address Station 19 CH-1015 Lausanne
City Lausanne
State/province VAUD
ZIP/Postal code 1015
Country Switzerland
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (9)
GSM6345758 KLF4.1
GSM6345759 KLF4.2
GSM6345760 KLF4.3
Relations
BioProject PRJNA859814

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE208403_16_KLF4-1_Ag_S19_vs_Pool_Ti_S17_peaks.bed.gz 90.0 Kb (ftp)(http) BED
GSE208403_17_KLF4-2_Ag_S20_vs_Pool_Ti_S17_peaks.bed.gz 148.5 Kb (ftp)(http) BED
GSE208403_18_KLF4-3_Ag_S21_vs_Pool_Ti_S17_peaks.bed.gz 211.9 Kb (ftp)(http) BED
GSE208403_2idox_611_ChIP_HA_S14_vs_2idox_611_ti_S13_peaks.bed.gz 303.8 Kb (ftp)(http) BED
GSE208403_RAW.tar 4.0 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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