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Series GSE210309 Query DataSets for GSE210309
Status Public on Mar 18, 2024
Title Pyrrole-based inhibitors of RND-type efflux pumps reverse antibiotic resistance and display antivirulence potential
Organism Pseudomonas aeruginosa
Experiment type Expression profiling by high throughput sequencing
Summary Efflux pumps of the resistance-nodulation-division (RND) superfamily, particularly the AcrAB-TolC and MexAB-OprM, besides mediating intrinsic and acquired resistance, also intervene in bacterial pathogenicity. Inhibitors of such pumps could restore activities of antibiotics and curb bacterial virulence. Here, we identify pyrrole-based compounds that boost antibiotic activity in Escherichia coli and Pseudomonas aeruginosa by inhibiting their archetype RND transporters. The discovered efflux pump inhibitors (EPIs) inhibit the efflux of fluorescent probes, attenuate persister formation, and diminish resistant mutant development. Molecular docking and biophysical studies revealed that the EPIs bind to AcrB. EPIs also possess an anti-pathogenic potential and attenuate P. aeruginosa virulence in vivo. The excellent efficacy of the EPI-antibiotic combination was evidenced in animal lung infection and sepsis protection models. These findings indicate that EPIs discovered herein with no off-target effects and negligible toxicity are potential antibiotic adjuvants to address life-threatening bacterial infections.
 
Overall design Comparative analysis of the the transcriptional profile of P. aeruginosa PAO1 in the presence and absence of sub-inhibitory concentration of Ar5 and PAβN
 
Contributor(s) Mahey N, Tambat R, Kalia R, Ingavale R, Chandal N, Kapoor S, Verma DK, Thakur KG, Jachak S, Nandanwar H, Kodesia A
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Submission date Aug 02, 2022
Last update date Mar 18, 2024
Contact name Nisha Mahey
E-mail(s) nishamahey95@gmail.com
Phone 08427496212
Organization name CSIR-Institute of Microbial Technology
Department BERPDC
Lab Clinical Microbiology and Antimicrobial Research Laboratory
Street address Sector 39A
City Chandigarh
State/province Chandigarh
ZIP/Postal code 160036
Country India
 
Platforms (1)
GPL26913 Illumina NovaSeq 6000 (Pseudomonas aeruginosa)
Samples (6)
GSM6427977 Control_1
GSM6427978 Control_2
GSM6427979 Ar5_1
Relations
BioProject PRJNA865169

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE210309_DeSeq_Comparison1.xlsx 1.5 Mb (ftp)(http) XLSX
GSE210309_DeSeq_Comparison2.xlsx 1.3 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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