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| Status |
Public on May 15, 2023 |
| Title |
Construction of ceRNA network based on an RNA‑seq shows prognostic lncRNA biomarkers in Perthes’ disease |
| Organism |
Oryctolagus cuniculus |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Construction of ceRNA network based on an RNA‑seq shows prognostic lncRNA biomarkers in Perthes’ disease
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| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for Perthes' disease and wild type rabbit
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| Web link |
https://www.frontiersin.org/articles/10.3389/fgene.2023.1105893/full
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| Contributor(s) |
Tianjiu Z, Chunyan W, Xiaolin H |
| Citation(s) |
37303951 |
| Submission date |
Nov 14, 2022 |
| Last update date |
Aug 14, 2023 |
| Contact name |
hu xiaolin |
| E-mail(s) |
184514@shsmu.edu.cn
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| Organization name |
Shanghai Jiaotong University School of Medicine
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| Street address |
south congqing road 227#
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| City |
Shanghai |
| State/province |
Shanghai |
| ZIP/Postal code |
20025 |
| Country |
China |
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| Platforms (2) |
| GPL21255 |
Illumina HiSeq 2500 (Oryctolagus cuniculus) |
| GPL25392 |
Illumina HiSeq 4000 (Oryctolagus cuniculus) |
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| Samples (16)
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| GSM6729716 |
Perthes' disease Rabbit, replicate 1 [TB-1] |
| GSM6729717 |
Perthes' disease Rabbit, replicate 2 [TB-2] |
| GSM6729718 |
Perthes' disease Rabbit, replicate 3 [TB-3] |
| GSM6729719 |
Perthes' disease Rabbit, replicate 4 [TB-4] |
| GSM6729720 |
Perthes' disease Rabbit, replicate 5 [TB-5] |
| GSM6729721 |
wild type Rabbit, replicate 1 [TD-1] |
| GSM6729722 |
wild type Rabbit, replicate 2 [TD-2] |
| GSM6729723 |
wild type Rabbit, replicate 2 [TD-3] |
| GSM6729724 |
Perthes' disease Rabbit, replicate 1,miRNA [TB_1] |
| GSM6729725 |
Perthes' disease Rabbit, replicate 2,miRNA [TB_2] |
| GSM6729726 |
Perthes' disease Rabbit, replicate 3,miRNA [TB_3] |
| GSM6729727 |
Perthes' disease Rabbit, replicate 4,miRNA [TB_4] |
| GSM6729728 |
Perthes' disease Rabbit, replicate 5,miRNA [TB_5] |
| GSM6729729 |
wild type Rabbit, replicate 1,miRNA [TD_1] |
| GSM6729730 |
wild type Rabbit, replicate 2,miRNA [TD_2] |
| GSM6729731 |
wild type Rabbit, replicate 2,miRNA [TD_3] |
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| Relations |
| BioProject |
PRJNA901386 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE217908_gene_counts.txt.gz |
3.7 Mb |
(ftp)(http) |
TXT |
| GSE217908_miRNA_counts.txt.gz |
11.1 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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