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Series GSE224273 Query DataSets for GSE224273
Status Public on Feb 01, 2023
Title Single-cell immune landscape of human atherosclerotic plaques
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Using single-cell proteomic and transcriptomic analyses, we uncovered distinct features of both T cells and macrophages in carotid artery plaques of patients with clinically symptomatic disease (recent stroke or transient ischemic attack) compared to asymptomatic disease (no recent stroke). Additionally, macrophages from these plaques contained alternatively activated phenotypes, including subsets associated with plaque vulnerability. In plaques from asymptomatic patients, T cells and macrophages were activated and displayed evidence of interleukin-1β signaling. The identification of specific features of innate and adaptive immune cells in plaques that are associated with cerebrovascular events may enable the design of more precisely tailored cardiovascular immunotherapies.
 
Overall design Carotid artery from atherosclerotic human samples, used scRNAseq to under the underlying immune molecular mechanism
 
Contributor(s) Giannarelli C
Citation(s) 31591603, 38076343
Submission date Feb 01, 2023
Last update date Dec 14, 2023
Contact name Dr. Chiara Giannarelli
E-mail(s) Chiara.Giannarelli@nyulangone.org
Organization name NYU Langone Health
Department Cardiology
Street address 435 E 30th St
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (9)
GSM7018579 Sample1_scRNAseq_Symptomatic
GSM7018580 Sample2_scRNAseq_Asymptomatic
GSM7018581 Sample3_scRNAseq_Asymptomatic
Relations
BioProject PRJNA930443

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE224273_RAW.tar 44.9 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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