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Series GSE229315 Query DataSets for GSE229315
Status Public on Apr 10, 2023
Title Clinical relevance of BRCA1 promoter methylation testing in ovarian cancer patients.
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary Homologous-recombination deficiency (HRD) is closely related to PARPi benefit in ovarian cancer (OC). The capacity of BRCA1 promoter methylation to predict prognosis and HRD status remains unclear. We aimed to correlate BRCA1 promoter methylation levels in patients with high-grade OC to HRD status and clinical behavior to assess its clinical relevance.
 
Overall design The detection of BRCA1 promoter methylation and quantification of methylation levels were performed by quantitative ddPCR methodology.
bisulfite-conversion + ddPCR
 
Contributor(s) Rouleau E, Leary A, Blanc Durand F
Citation(s) 37067532
Submission date Apr 10, 2023
Last update date Jul 17, 2023
Contact name Felix Blanc-Durand
E-mail(s) felix.blanc-durand@gustaveroussy.fr
Organization name Institut Gustave Roussy
Department Medical Oncology
Street address 114 rue Edouard Vaillant
City Villejuif
ZIP/Postal code 94800
Country France
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (100)
GSM7158720 XT-GR-84
GSM7158721 XT-GR-42
GSM7158722 XT-GR-86
Relations
BioProject PRJNA954005

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE229315_RAW.tar 16.1 Mb (http)(custom) TAR (of VCF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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