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Series GSE234697 Query DataSets for GSE234697
Status Public on Jan 23, 2024
Title Homeodomain-only protein (HOPX) negatively regulates CD8+ T cell proliferation and affects differentiation and aging
Organism Homo sapiens
Experiment type Expression profiling by array
Summary HOPX is an atypical homeodomain-containing protein lacking DNA-binding capacity. Via interaction with transcription factors, particularly SRF, it has critical functions in the development of various tissues. Here we unveil an essential regulatory role of HOPX in human T lymphocytes. Human CD8+ T cells expressed all three isoforms (a, b, and c) of HOPX wherein HOPXb was the predominant one. HOPX expression was induced by TCR activation and increased from TN to TEM cells. Overexpression of HOPX constrained the proliferation of TN cells while knockdown of HOPX promoted the proliferation of TEM cells upon TCR activation. Mechanistically, HOPX/SRF bound to the promoters and repressed expression of MYC and NR4A1, the key regulators of T cell proliferation and activation. Importantly, CD8+ T cells from the elderly had elevated levels of HOPX, correlated with their blunted TCR-induced proliferation. Knockdown of HOPX rescued the proliferative capacity of T cells from the elderly. Our results support that HOPX is a molecular switch that balances CD8+ T cell proliferation across subsets and with age.
 
Overall design Micrarrray-based transcriptome profiling of RNA from tdTom+ cells derived from HOPXb transduced and control CD8+ human naïve T cells (TN) cells three days after HOPXb or control lentivirus transduction (N= four individuals per condition).
 
Contributor(s) Yang Q, Patrick M, Lu J, Chen J, Zhang Y, Hemani H, Lehrmann E, Weng N
Citation(s) 38410516
Submission date Jun 12, 2023
Last update date Mar 07, 2024
Contact name Supriyo De
Organization name NIA-IRP, NIH
Department Laboratory of Genetics and Genomics
Lab Computational Biology & Genomics Core
Street address 251 Bayview Blvd
City Baltimore
State/province Maryland
ZIP/Postal code 21224
Country USA
 
Platforms (1)
GPL20844 Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Feature Number Version]
Samples (8)
GSM7473459 CD8_CTR_S11_F58
GSM7473460 CD8_CTR_S13_F31
GSM7473461 CD8_CTR_S25_M42
Relations
BioProject PRJNA982782

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE234697_RAW.tar 59.4 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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