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Series GSE24434 Query DataSets for GSE24434
Status Public on Feb 12, 2011
Title Host cell transcriptome response to expression of the human cytomegalovirus (hCMV) 72-kDa immediate-early 1 (IE1) protein
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Human cytomegalovirus (hCMV) is a highly prevalent pathogen that, upon primary infection, establishes life-long persistence in all infected individuals. Acute hCMV infections cause a variety of diseases in humans with developmental or acquired immune deficits. In addition, persistent hCMV infection may contribute to various chronic disease conditions even in immunologically normal people. The pathogenesis of hCMV disease has been frequently linked to inflammatory host immune responses triggered by virus-infected cells. Moreover, hCMV infection activates numerous host genes many of which encode pro-inflammatory proteins. However, little is known about the relative contributions of individual viral gene products to these changes in cellular transcription. We systematically analyzed the effects of the hCMV 72-kDa immediate-early 1 (IE1) protein, a major transcriptional activator and antagonist of type I interferon (IFN) signaling, on the human transcriptome. Following expression under conditions closely mimicking the situation during productive infection, IE1 elicits a global type II IFN-like host cell response. This response is dominated by the selective up-regulation of immune stimulatory genes normally controlled by IFN-gamma and includes the synthesis and secretion of pro-inflammatory chemokines. IE1-mediated induction of IFN-stimulated genes strictly depends on tyrosine-phosphorylated signal transducer and activator of transcription 1 (STAT1) and correlates with the nuclear accumulation and sequence-specific binding of STAT1 to IFN-gamma-responsive promoters. However, neither synthesis nor secretion of IFN-gamma or other IFNs seems to be required for the IE1-dependent effects on cellular gene expression. Our results demonstrate that a single hCMV protein can trigger a pro-inflammatory host transcriptional response via an unexpected STAT1-dependent but IFN-independent mechanism and identify IE1 as a candidate determinant of hCMV pathogenicity.
 
Overall design We used a total of 18 microarrays for analyzing triplicate samples each of IE1-negative control fibroblasts (TetR cells) without induction (3 arrays), fibroblasts containing inducible IE1 (TetR-IE1 cells) without induction (3 arrays), TetR cells induced for 24 h (3 arrays), TetR-IE1 cells induced for 24 h (3 arrays), TetR cells induced for 72 h (3 arrays), and TetR-IE1 cells induced for 72 h (3 arrays)
Web link http://www-nw.uni-regensburg.de/~.nem10977.mmh.klinik.uni-regensburg.de
 
Contributor(s) Knoblach T, Grandel B, Seiler J, Nevels M, Paulus C
Citation(s) 21533215
Submission date Sep 29, 2010
Last update date Jul 26, 2018
Contact name Michael Nevels
E-mail(s) michael.nevels@klinik.uni-regensburg.de
Organization name University of Regensburg
Department Medical Microbiology
Lab Nevels
Street address Franz-Josef-Strauss-Allee 11
City Regensburg
ZIP/Postal code 93053
Country Germany
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (18)
GSM602165 TetR-IE1_uninduced_replicate 1
GSM602166 TetR-IE1_uninduced_replicate 2
GSM602167 TetR-IE1_uninduced_replicate 3
Relations
BioProject PRJNA132787

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE24434_RAW.tar 83.7 Mb (http)(custom) TAR (of CEL, JPG)
GSE24434_comparison_analysis_file.txt.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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