 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Dec 18, 2023 |
| Title |
CUT&RUN profiling of Tfap2a binding genome-wide using zebrafish embryos at 24hpf |
| Organism |
Danio rerio |
| Experiment type |
Other
|
| Summary |
The purpose of this study was to identify Tfap2a binding genome-wide in zebrafish embryos at 24hpf. Tfap2 transcription factors are essential regulators of neural crest development, melanocyte differentiation, and melanoma progression. We aimed to identify Tfap2a-occupied genes to determine direct Tfap2a-regulated transcriptional networks.
|
| |
|
| Overall design |
Zebrafish embryos at 24hpf were used to profile Tfap2a occupied genes genome-wide using CUT&RUN followed by sequencing
|
| |
|
| Contributor(s) |
Kenny C, Cornell R |
| Citation(s) |
38063857 |
| Submission date |
Dec 18, 2023 |
| Last update date |
Feb 14, 2024 |
| Contact name |
Colin Kenny |
| E-mail(s) |
colin-kenny@uiowa.edu
|
| Organization name |
University of Iowa
|
| Department |
Surgery
|
| Lab |
Kenny Lab
|
| Street address |
5269B CBRC Newton Road
|
| City |
Iowa City |
| State/province |
Iowa |
| ZIP/Postal code |
52242 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24995 |
Illumina NovaSeq 6000 (Danio rerio) |
|
| Samples (2) |
|
| Relations |
| BioProject |
PRJNA1054088 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE250450_24hpf_Tfap2a_peaks.bed.gz |
547.4 Kb |
(ftp)(http) |
BED |
| GSE250450_RAW.tar |
108.0 Mb |
(http)(custom) |
TAR (of BIGWIG) |
SRA Run Selector |
| Raw data are available in SRA |
|
|
|
|
 |
