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Series GSE256923

Query DataSets for GSE256923

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR143DRQ)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq against eGFP-ztf-11 in mixed stage (embryonic) worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR143DRQ/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Feb 27, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13776

Illumina Genome Analyzer IIx (Caenorhabditis elegans)

Samples (2)

GSM8106797	TF ChIP-seq from whole organism (ENCLB526VLR)
GSM8106798	TF ChIP-seq from whole organism (ENCLB545EGD)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE256923_ENCFF027LSG_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256923_ENCFF035XJC_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256923_ENCFF041JMZ_peaks_and_background_as_input_for_IDR_ce10.bigBed	583.5 Kb	(ftp)(http)	BIGBED
GSE256923_ENCFF059AGA_optimal_IDR_thresholded_peaks_ce11.bigBed	87.6 Kb	(ftp)(http)	BIGBED
GSE256923_ENCFF079WLY_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256923_ENCFF261JTB_optimal_IDR_thresholded_peaks_ce10.bigBed	87.7 Kb	(ftp)(http)	BIGBED
GSE256923_ENCFF342HLO_peaks_and_background_as_input_for_IDR_ce11.bed.gz	306.9 Kb	(ftp)(http)	BED
GSE256923_ENCFF370TPS_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256923_ENCFF545CBZ_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256923_ENCFF814GEC_peaks_and_background_as_input_for_IDR_ce10.bed.gz	307.8 Kb	(ftp)(http)	BED
GSE256923_ENCFF934KGZ_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256923_ENCFF976PRK_peaks_and_background_as_input_for_IDR_ce11.bigBed	582.2 Kb	(ftp)(http)	BIGBED
GSE256923_ENCFF998SQM_optimal_IDR_thresholded_peaks_ce11.bed.gz	18.3 Kb	(ftp)(http)	BED
GSE256923_ENCFF999YEU_optimal_IDR_thresholded_peaks_ce10.bed.gz	18.5 Kb	(ftp)(http)	BED
GSE256923_RAW.tar	123.9 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA