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Series GSE257751

Query DataSets for GSE257751

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR694VLW)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing DVE-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR694VLW/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Feb 27, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13776

Illumina Genome Analyzer IIx (Caenorhabditis elegans)

Samples (2)

GSM8108475	TF ChIP-seq from whole organism (ENCLB361UBS)
GSM8108476	TF ChIP-seq from whole organism (ENCLB413WZD)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE257751_ENCFF025UAC_optimal_IDR_thresholded_peaks_ce10.bigBed	290.5 Kb	(ftp)(http)	BIGBED
GSE257751_ENCFF090AJT_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.1 Mb	(ftp)(http)	BIGBED
GSE257751_ENCFF119SDI_peaks_and_background_as_input_for_IDR_ce11.bed.gz	711.8 Kb	(ftp)(http)	BED
GSE257751_ENCFF138SED_signal_of_unique_reads_ce11.bigWig	9.7 Mb	(ftp)(http)	BIGWIG
GSE257751_ENCFF191ALG_read-depth_normalized_signal_ce10.bigWig	9.7 Mb	(ftp)(http)	BIGWIG
GSE257751_ENCFF271UHW_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257751_ENCFF293RWG_optimal_IDR_thresholded_peaks_ce10.bed.gz	136.5 Kb	(ftp)(http)	BED
GSE257751_ENCFF456GTO_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257751_ENCFF560YTQ_optimal_IDR_thresholded_peaks_ce11.bed.gz	136.1 Kb	(ftp)(http)	BED
GSE257751_ENCFF598ZSJ_peaks_and_background_as_input_for_IDR_ce10.bed.gz	710.9 Kb	(ftp)(http)	BED
GSE257751_ENCFF775ISX_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.1 Mb	(ftp)(http)	BIGBED
GSE257751_ENCFF808FTE_optimal_IDR_thresholded_peaks_ce11.bigBed	290.3 Kb	(ftp)(http)	BIGBED
GSE257751_ENCFF922SGJ_signal_of_unique_reads_ce10.bigWig	9.7 Mb	(ftp)(http)	BIGWIG
GSE257751_ENCFF934JFH_read-depth_normalized_signal_ce11.bigWig	9.7 Mb	(ftp)(http)	BIGWIG
GSE257751_RAW.tar	124.0 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA