NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE258007 Query DataSets for GSE258007
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR710IDA)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq against eGFP-zag-1 in L4 larva worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR710IDA/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Feb 27, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL13776 Illumina Genome Analyzer IIx (Caenorhabditis elegans)
Samples (2)
GSM8109009 TF ChIP-seq from whole organism (ENCLB591RFX)
GSM8109010 TF ChIP-seq from whole organism (ENCLB988RFO)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE258007_ENCFF131EFO_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258007_ENCFF152KBY_peaks_and_background_as_input_for_IDR_ce10.bigBed 208.8 Kb (ftp)(http) BIGBED
GSE258007_ENCFF227VXQ_optimal_IDR_thresholded_peaks_ce11.bed.gz 5.9 Kb (ftp)(http) BED
GSE258007_ENCFF234RXL_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE258007_ENCFF373SKT_optimal_IDR_thresholded_peaks_ce11.bigBed 48.2 Kb (ftp)(http) BIGBED
GSE258007_ENCFF400ZYN_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258007_ENCFF463JVK_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258007_ENCFF540PCM_optimal_IDR_thresholded_peaks_ce10.bed.gz 5.0 Kb (ftp)(http) BED
GSE258007_ENCFF705AMG_peaks_and_background_as_input_for_IDR_ce11.bed.gz 103.5 Kb (ftp)(http) BED
GSE258007_ENCFF772ABU_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258007_ENCFF797AGB_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE258007_ENCFF850NGE_peaks_and_background_as_input_for_IDR_ce11.bigBed 219.2 Kb (ftp)(http) BIGBED
GSE258007_ENCFF906IZB_optimal_IDR_thresholded_peaks_ce10.bigBed 46.9 Kb (ftp)(http) BIGBED
GSE258007_ENCFF995HYO_peaks_and_background_as_input_for_IDR_ce10.bed.gz 95.9 Kb (ftp)(http) BED
GSE258007_RAW.tar 121.4 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap