|
| Status |
Public on Nov 01, 2012 |
| Title |
Natural variation in the yeast glucose-signaling network reveals a new role for the Mig3p transcription factor |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by array
|
| Summary |
The Crabtree effect, in which fermentative metabolism is preferred at the expense of respiration, is a hallmark of budding yeast’s glucose response and a model for the Warburg effect in human tumors. While the glucose-responsive transcriptional repressors Mig1p and Mig2p play well-characterized roles in the Crabtree effect, little function for the related Mig3p transcription factor has been uncovered despite numerous investigations of laboratory yeast strains. Here we studied a wild isolate of Saccharomyces cerevisiae to uncover a critical role for Mig3p that has been lost in S288c-derived laboratory strains. We found that Mig3p affects the expression of hundreds of glucose-responsive genes in the oak strain YPS163, both during growth under standard conditions and upon ethanol treatment. Our results suggest that Mig3p may act as a multifunctional activator/repressor that plays separate roles under standard versus stress conditions, but this function has been largely lost in the lab strains. Population analysis suggests that the lab strain, and several wild strains, harbor mutations that diminish Mig3p function. Thus, by expanding our attention to multiple genetic backgrounds, we have uncovered an important missing link in a key metabolic response.
|
| |
|
| Overall design |
We performed a series of microarray experiments comparing the gene expression response of unstressed or EtOH stressed wild-type or mig3∆ strains in either the BY4741 or YPS163 background (biological triplicates). We also compared gene expression for in reciprocal hemizygous strains (YPS163/BY4741mig3∆ and YPS163mig3∆/BY4742; biological duplicates). Lastly, we measured the gene expression of BY4741 over-expressing BY_MIG3 via galactose induction (biological triplicates).
|
| |
|
| Contributor(s) |
Lewis JA, Gasch AP |
| Citation(s) |
23275883 |
| Submission date |
Aug 15, 2012 |
| Last update date |
Jan 04, 2013 |
| Contact name |
Jeffrey A. Lewis |
| E-mail(s) |
lewisja@uark.edu
|
| Phone |
608-347-3661
|
| Organization name |
University of Arkansas
|
| Department |
Biological Sciences
|
| Lab |
Lewis Lab
|
| Street address |
850 W. Dickson St.
|
| City |
Fayetteville |
| State/province |
AR |
| ZIP/Postal code |
72701 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13254 |
UWAPG GPL9529 Saccharomyces cerevisiae v1.0 [ORF centered] |
|
| Samples (19)
|
|
| Relations |
| BioProject |
PRJNA172935 |
Less...
More...