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Series GSE40693 Query DataSets for GSE40693
Status Public on Sep 08, 2012
Title Transcriptional response of Escherichia coli O157:H7 to cinnamaldehyde
Platform organism Escherichia coli
Sample organism Escherichia coli O157:H7
Experiment type Expression profiling by array
Summary Cinnamaldehyde is a natural antimicrobial and has been found to be effective against many foodborne pathogens including Escherichia coli O157:H7. Although its antimicrobial effects have been well investigated, limited information is available on its effects at the molecular level. Sublethal treatment at 200 mg/l cinnamaldehyde inhibited growth of E. coli O157:H7 at 37oC and for ≤ 2 h caused cell elongation, but from 2 to 4 h growth resumed and cells reverted to normal length. To understand this transient behaviour, genome-wide transcriptional analysis of E. coli O157:H7 was performed at 2 and 4 h exposure to cinnamaldehyde. Drastically different gene expression profiles were obtained at 2 and 4 h. At 2 h exposure, cinnamaldehyde induced overexpression of many oxidative stress-related genes, reduced DNA replication, and synthesis of protein, O-antigen and fimbriae. At 4 h, many cinnamaldehyde-induced repressive effects on E. coli O157:H7 gene expressions were reversed and oxidatve stress genes were nolonger differentially expressed.
 
Overall design Duplicate E. coli O157:H7 cultures with or without 200 mg/l cinnamaldehyde were incubated at 37°C for ≤ 4 h. Cinnamaldehyde-induced changes in gene expression profiles were compared at 2 and 4 h using Affymetrix Ginechip 2.0 microarrays.
 
Contributor(s) Visvalingam J, Hernandez-Doria JD, Holley RA
Citation(s) 23183978
Submission date Sep 07, 2012
Last update date Mar 08, 2019
Contact name Richard A Holley
E-mail(s) rick_holley@umanitoba.ca
Fax 0012044747630
Organization name University of Manitoba
Department Department of Food Science
Street address 250 Ellis Building
City Winnipeg
State/province Manitoba
ZIP/Postal code R3T 2N2
Country Canada
 
Platforms (1)
GPL3154 [E_coli_2] Affymetrix E. coli Genome 2.0 Array
Samples (8)
GSM999245 E. coli O157:H7 at 2 h control biological rep1
GSM999246 E. coli O157:H7 at 2 h control biological rep2
GSM999247 E. coli O157:H7 at 4 h control biological rep1
Relations
BioProject PRJNA174627

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40693_RAW.tar 5.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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