|
| Status |
Public on Mar 05, 2013 |
| Title |
Patterns of Population Epigenomic Diversity in Arabidopsis thaliana (Methyl-Seq) |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Natural epigenetic variation provides a source for the generation of phenotypic diversity, but to understand its contribution to phenotypic diversity, its interaction with genetic variation requires further investigation.
|
| |
|
| Overall design |
MethylC-seq from naturally-occurring Arabidopsis accessions
|
| Web link |
http://1001epigenomes.org
|
| |
|
| Contributor(s) |
Schmitz RJ, Kawakatsu T, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Schultz MD, Chen H, Ecker JR |
| Citation(s) |
23467092, 27419873 |
| Submission date |
Jan 29, 2013 |
| Last update date |
May 29, 2019 |
| Contact name |
Joseph R Ecker |
| E-mail(s) |
ecker@salk.edu
|
| Phone |
8584534100
|
| Organization name |
HHMI-Salk-Institute
|
| Department |
Genomic Analysis Laboratory
|
| Lab |
Ecker lab
|
| Street address |
10010 North Torrey Pines Road
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL11221 |
Illumina Genome Analyzer IIx (Arabidopsis thaliana) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
|
| Samples (927)
|
|
| Relations |
| BioProject |
PRJNA187927 |
| SRA |
SRP018263 |
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