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| Status |
Public on Jun 10, 2014 |
| Title |
Whole Adult Organism Transcriptional Profiling of Metal Exposures in Zebrafish |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by array
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| Summary |
A convergence of technological breakthroughs in the past decade has facilitated the development of rapid screening tools for biomarkers of toxicant exposure and effect. Platforms using the whole adult organism to evaluate the genome-wide response to toxicants are especially attractive. Recent work demonstrates the feasibility of this approach in vertebrates using the experimentally robust zebrafish model. In the present study, we evaluated gene expression changes in whole adult zebrafish following an acute 24 hour exposure to three metals with known human health risks. Male adult zebrafish were exposed to nickel chloride, cobalt chloride, and sodium dichromate concentrations corresponding to their respective 96 hr LC20, LC40 and LC60. Histopathology was performed on a subset of metal-exposed zebrafish to phenotypically anchor transcriptional changes associated with each metal. Comparative analysis identified subsets of differentially expressed transcripts both overlapping and unique to each metal. Application of gene ontology (GO) and transcription factor enrichment algorithms revealed a number of key biological processes perturbed by metal exposures and the master transcriptional regulators mediating gene expression changes. Metal exposures differentially activated biological processes associated with ribosome biogenesis, proteosomal degradation and p53 signaling cascades, while repressing oxygen-generating pathways associated with amino acid and lipid metabolism. Despite appreciable effects on gene regulation, nickel exposures did not induce any morphological alterations in zebrafish organs and tissues. Histopathological effects of cobalt remained confined to the olfactory system, while chromium targeted the gills, pharynx and intestinal mucosa. A number of enriched transcription factors mediate the observed gene response to metal exposure, including known targets such as p53, HIF1 and the myc oncogene and novel regulatory factors such as XBP1, GATA6 and HNF3. This work uses an experimentally innovative approach to capture global responses to metal exposures and provides mechanistic insights into metal toxicity mechanisms.
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| Overall design |
Metal induced changes in gene expression in zebrafish were measured after 24 h exposures to each of three metals (nickel, chromium or cobalt). A total of 48 arrays were processed - 16 arrays per metal with 4 replicates for each exposure condition (control, low, mid, and high).
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| Contributor(s) |
Hussainzada N, Lewis JA, Baer CE, Ippolito DL, Jackson DA, Stallings JD |
| Citation(s) |
26484131, 24612858 |
| Submission date |
Sep 06, 2013 |
| Last update date |
Jul 16, 2018 |
| Contact name |
Christine Baer |
| E-mail(s) |
christine.e.baer2.ctr@mail.mil
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| Organization name |
Excet, Inc. / USACEHR
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| Department |
Environmental Health Program
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| Street address |
568 Doughten Drive
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| City |
Ft. Detrick |
| State/province |
MD |
| ZIP/Postal code |
21702-5010 |
| Country |
USA |
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| Platforms (1) |
| GPL17686 |
Agilent-017662 Danio rerio Zv7_USACEHR [Probe name version] |
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| Samples (48)
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| Relations |
| BioProject |
PRJNA218201 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE50648_RAW.tar |
83.3 Mb |
(http)(custom) |
TAR (of GPR) |
| Processed data included within Sample table |
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