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Series GSE58945 Query DataSets for GSE58945
Status Public on May 29, 2015
Title DK003: FOXO target gene CTDSP2 inhibits cell cycle progression through regulation of p21-Cip1/Waf1
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Activity of Forkhead box O (FOXO) transcription factors is inhibited by PI3K-PKB/Akt signalling to control a variety of cellular processes including cell cycle progression. Through comparative analysis of a number of microarray datasets, we identified a set of genes commonly regulated by FOXO and PI3K/PKB, which includes Carboxyl-Terminal Domain Small Phosphatase 2 (CTDSP2). We validated CTDSP2 as a genuine FOXO target gene and show that ectopic CTDSP2 can induce cell cycle arrest. We analysed transcriptional regulation after CTDSP2 expression and identified extensive regulation of genes involved in cell cycle progression, which depends on the phosphatase activity of CTDSP2. Most notably regulated genes are p21Cip1/Waf1 and E2F1, both implicated in S-phase entry. We show that p21Cip1/Waf1 is regulated by CTDSP2 in a p53-independent manner and that p21Cip1/Waf1 upregulation results in decreased cyclin/CDK2 and cyclin/CDK6 activity. Thus, we identify FOXO-dependent CTDSP2 regulation as a novel regulatory mechanism for inhibiting proliferation in the absence of growth factor/PI3K signalling.
 
Overall design DL23 cells, containing FoxO3.A3-ER, stimulated with 4OHT for 8 hrs were compared to unstimulated cells in a direct comparison on dual-channel spotted expression microarrays. 4 biological replicates each were used. RNA samples were isolated and dye-swaps were done on half of the samples.
 
Contributor(s) Kloet DE, Polderman PE, Eijkelenboom AE, Smits LM, van Triest MH, van den Berg MC, Groot Koerkamp MJ, van Leenen D, Lijnzaad P, Holstege FC, Burgering BM
Citation(s) 25990325
Submission date Jun 30, 2014
Last update date May 30, 2015
Contact name Marian Groot Koerkamp
Organization name Princess Maxima Center for Pediatric Oncology
Department Research
Lab Drostlab
Street address Heidelberglaan 25
City Utrecht
State/province Utrecht
ZIP/Postal code 3584 CS
Country Netherlands
 
Platforms (1)
GPL13183 A-UMCU-H25k-1.0
Samples (4)
GSM1422786 DL23-0a vs. DL23-8a
GSM1422787 DL23-0c vs. DL23-8c
GSM1422788 DL23-8b vs. DL23-0b
This SubSeries is part of SuperSeries:
GSE58987 FOXO target gene CTDSP2 inhibits cell cycle progression through regulation of p21-Cip1/Waf1
Relations
BioProject PRJNA254056

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58945_RAW.tar 5.6 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data provided as supplementary file

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