NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE67748 Query DataSets for GSE67748
Status Public on Jun 09, 2015
Title Cerebellum Illumina Inf 450 DNA methylation samples from HIV+ and HIV- human subjects
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiles of cerebellum from HIV positive and HIV negative human subjects. The Illumina Infinium 450k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 486,000 CpGs. Dataset included 20 subjects from the USA. The epigenetic clock software (Horvath 2013) was used to measure epigenetic age acceleration effects and to relate them to HIV status.
 
Overall design Bisulphite converted DNA from the 20 samples were hybridised to the Illumina Infinium 450k Human Methylation Beadchip. 8 HIV+ subjects were compared to 12 HIV- subjects.
 
Contributor(s) Horvath S, Levine AJ
Citation(s) 25969563
Submission date Apr 10, 2015
Last update date Mar 22, 2019
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (20)
GSM1655132 genomic DNA from human cerebellum sample 1
GSM1655133 genomic DNA from human cerebellum sample 2
GSM1655134 genomic DNA from human cerebellum sample 3
Relations
BioProject PRJNA280836

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE67748_Explanation_of_characteristic_variables.pdf.gz 170.1 Kb (ftp)(http) PDF
GSE67748_RAW.tar 183.1 Mb (http)(custom) TAR
GSE67748_datSignal_cerebellum.csv.gz 48.5 Mb (ftp)(http) CSV
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap