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| Status |
Public on Jul 30, 2016 |
| Title |
DNA methylome patterns of zebrafish cells under cold pressure |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
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| Summary |
In this study, MeDIP-seq and RNA-seq were performed to reveal a genome-wide methylation profile of zebrafish (Danio rerio) embryonic fibroblast cell line (ZF4) and its variation under cold environment.This study puts a new insight into the genome-wide epigenetic regulation under cold environment.
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| Overall design |
ZF4 cells were cultured at 28 °C as control and at 18 °C for 5 days and 30 days, seperately. Each condition has three biological replica.
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| Contributor(s) |
Zhang J, Han B, Chen Z, Li W, Chen L |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jul 30, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Junfang Zhang |
| E-mail(s) |
jfzhang@shou.edu.cn
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| Phone |
86-21-61900476
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| Organization name |
Shanghai Ocean University
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| Department |
College of fishery and life science
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| Street address |
Huchenghuan Road 999
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| City |
Shanghai |
| ZIP/Postal code |
201306 |
| Country |
China |
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| Platforms (1) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
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| Samples (13)
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| Relations |
| BioProject |
PRJNA291530 |
| SRA |
SRP061852 |
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