|
| Status |
Public on Nov 18, 2017 |
| Title |
Serum miR-122-5p and miR-206 expression: Non-invasive prognostic biomarkers for renal cell carcinoma |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Analysis of the small non-coding RNA expression profile in cell-free serum RNA of patients with clear cell renal cell carcinoma (RCC) and patients with benign renal tumors (BRT) in order to identify novel non-invasive biomarkers for patients with RCC. Aims: (1) to compare the expression profile of patients with RCC and BRT. (2) to compare the expression profile of patients with localized (M=0) and metastatic (M=1) RCC.
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| |
|
| Overall design |
small RNA expression profiling and sequencing in serum of patients with clear cell renal cell carcinoma (RCC) and benign renal tumors (BRT)
|
| |
|
| Contributor(s) |
Heinemann F, Tolkach Y, Deng M, Schmidt D, Perner S, Kristiansen G, Müller SC, Ellinger J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Aug 16, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Jörg Ellinger |
| E-mail(s) |
joerg.ellinger@ukb.uni-bonn.de
|
| Organization name |
Universitätsklinikum Bonn
|
| Department |
Urologie
|
| Street address |
Sigmund-Freud-Straße 25
|
| City |
Bonnn |
| State/province |
NRW |
| ZIP/Postal code |
53127 |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (26)
|
|
| Relations |
| BioProject |
PRJNA339130 |
| SRA |
SRP082216 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE85699_annex_2_miRNA_result_tables.xlsx |
76.3 Kb |
(ftp)(http) |
XLSX |
| GSE85699_annex_3_miRNA_counts.xlsx |
347.3 Kb |
(ftp)(http) |
XLSX |
| GSE85699_annex_3_piRNA_counts.xlsx |
68.8 Kb |
(ftp)(http) |
XLSX |
| GSE85699_annex_4_miRNA_expression.xlsx |
514.6 Kb |
(ftp)(http) |
XLSX |
| GSE85699_annex_4_piRNA_expression.xlsx |
87.8 Kb |
(ftp)(http) |
XLSX |
| GSE85699_annex_5_isomiR_counts.xlsx |
4.3 Mb |
(ftp)(http) |
XLSX |
| GSE85699_annex_5_piRNA_result_tables.xlsx |
15.6 Kb |
(ftp)(http) |
XLSX |
| GSE85699_annex_6_counts_other_small_RNAs.txt.gz |
3.8 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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