|
| Status |
Public on Dec 30, 2016 |
| Title |
Schizophrenia: postmortem dorsal lateral prefrontal cortex (DLPFC) |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA-Seq analysis of post-mortem tissue from DLPFC of 19 schizophrenia patients and 19 controls.
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| |
|
| Overall design |
mRNA sequencing of post-mortem brain tissue from the dorsal lateral prefrontal cortex (DLPFC) from 19 male controls and 19 male schizophrenia patients generated by deep sequening using the Applied Biosystems SOLiD platform. Raw reads were mapped with Tophat2 to create the associated bam files. Feature counting was performed with HTSeq-count. This mapping and analysis protocol differs from the mapping and analysis reported previously in Fillman et al. Molecular Psychiatry (2012) 1-9.
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| |
|
| Contributor(s) |
Corley SM, Wilkins MR, Shannon-Weickert C |
| Citation(s) |
27992436 |
| Submission date |
Sep 21, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Susan Corley |
| E-mail(s) |
s.corley@unsw.edu.au
|
| Phone |
+61 02 9385 8853
|
| Organization name |
UNSW
|
| Department |
Biotechnology & Biomolecular Sciences
|
| Lab |
Systems Biology Initiative
|
| Street address |
D26, Kensignton Campus
|
| City |
Sydney |
| State/province |
NSW |
| ZIP/Postal code |
2052 |
| Country |
Australia |
| |
|
| Platforms (1) |
| GPL13393 |
AB SOLiD 4 System (Homo sapiens) |
|
| Samples (38)
|
|
| Relations |
| BioProject |
PRJNA343829 |
| SRA |
SRP090259 |
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