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| Status |
Public on Oct 12, 2016 |
| Title |
RNA-seq analysis of transcriptomes at 5 day after sexual induction in Fusarium graminearum strains |
| Organism |
Fusarium graminearum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. To dissect molecular mechanisms of small non-coding RNA-mediated gene regulation during ascospore production, we compared transcriptomes of fungal cultures harvested from F. graminearum wild-type strain Z-3639 and RNAi component mutants at 5 days after sexual induction.
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| Overall design |
7 samples examined: Fungal cultures harvested from Fusarium graminearum wild-type strain Z-3639, Fgdicer1, Fgdicer2, Fgdicer1 Fgdicer2, Fgago1, Fgago2, and Fgago1 Fgago2 at 5 days after sexual induction.
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| Contributor(s) |
Lim JY, Son H, Lee Y |
| Citation(s) |
28146558 |
| |
| Submission date |
Oct 06, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Hokyoung Son |
| E-mail(s) |
hogongi@gmail.com
|
| Organization name |
Seoul National University
|
| Department |
Center for Food and Bioconvergence
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| Street address |
Daehak-dong, Gwanak-gu
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| City |
Seoul |
| ZIP/Postal code |
151-921 |
| Country |
South Korea |
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| Platforms (1) |
| GPL17573 |
Illumina HiSeq 2000 (Fusarium graminearum) |
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| Samples (7)
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| GSM2339343 |
mRNAs from Fusarium graminearum wild-type strain Z-3639 at 5 days after sexual induction |
| GSM2339344 |
mRNAs from Fusarium graminearum mutant strain Fgdicer1 at 5 days after sexual induction |
| GSM2339345 |
mRNAs from Fusarium graminearum mutant strain Fgdicer2 at 5 days after sexual induction |
| GSM2339346 |
mRNAs from Fusarium graminearum mutant strain Fgdicer1 Fgdicer2 at 5 days after sexual induction |
| GSM2339347 |
mRNAs from Fusarium graminearum mutant strain Fgago1 at 5 days after sexual induction |
| GSM2339348 |
mRNAs from Fusarium graminearum mutant strain Fgago2 at 5 days after sexual induction |
| GSM2339349 |
mRNAs from Fusarium graminearum mutant strain Fgago1 Fgago2 at 5 days after sexual induction |
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| Relations |
| BioProject |
PRJNA345628 |
| SRA |
SRP090947 |
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