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GEO accession:
Series GSE93029
Query DataSets for GSE93029
Status
Public on Dec 09, 2017
Title
Chromatin Open/Close Logic in Cellular Reprogramming
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
29220666
,
29625068
,
30774978
Submission date
Dec 30, 2016
Last update date
Jul 25, 2021
Contact name
dongwei Li
E-mail(s)
li_dongwei@gibh.ac.cn
Organization name
Guangzhou Institutes of Biomedicine and Health,Chinese Academy of Sciences
Department
South China Institute for Stem Cell Biology and Regenerative Medicine
Lab
Duanqing Pei lab
Street address
190 Kai Yuan Avenue, Science Park
City
Guangzhou
State/province
Guangdong province
ZIP/Postal code
510530
Country
China
Platforms (1)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (110)
Less...
More...
GSM2442665
ESCs(ATAC-seq)-rep1
GSM2442666
ESCs(ATAC-seq)-rep2
GSM2442667
iPS(ATAC-seq)-rep1
GSM2442668
iPS(ATAC-seq)-rep2
GSM2442669
K-D1(ATAC-seq)-rep1
GSM2442670
K-D1(ATAC-seq)-rep2
GSM2442671
MEF(ATAC-seq)-rep1
GSM2442672
MEF(ATAC-seq)-rep2
GSM2442673
mES-OSK-D7(ATAC-seq)-rep1
GSM2442674
mES-OSK-D7(ATAC-seq)-rep2
GSM2442675
O-D1(ATAC-seq)-rep1
GSM2442676
O-D1(ATAC-seq)-rep2
GSM2442677
OK-D1(ATAC-seq)-rep1
GSM2442678
OK-D1(ATAC-seq)-rep2
GSM2442679
OS-D1(ATAC-seq)-rep1
GSM2442680
OS-D1(ATAC-seq)-rep2
GSM2442681
OSK-cJun-D0(ATAC-seq)-rep1
GSM2442682
OSK-cJun-D0(ATAC-seq)-rep2
GSM2442683
OSK-cJun-D1(ATAC-seq)-rep1
GSM2442684
OSK-cJun-D1(ATAC-seq)-rep2
GSM2442685
OSK-cJun-D3(ATAC-seq)-rep1
GSM2442686
OSK-cJun-D3(ATAC-seq)-rep2
GSM2442687
OSK-cJun-D7(ATAC-seq)-rep1
GSM2442688
OSK-cJun-D7(ATAC-seq)-rep2
GSM2442689
OSK-D0(ATAC-seq)-rep1
GSM2442690
OSK-D0(ATAC-seq)-rep2
GSM2442691
OSK-D1(ATAC-seq)-rep1
GSM2442692
OSK-D1(ATAC-seq)-rep2
GSM2442693
OSK-D3-GFP-neg(ATAC-seq)-rep1
GSM2442694
OSK-D3-GFP-neg(ATAC-seq)-rep2
GSM2442695
OSK-D3-GFP-pos(ATAC-seq)-rep1
GSM2442696
OSK-D3-GFP-pos(ATAC-seq)-rep2
GSM2442697
OSK-D3(ATAC-seq)-rep1
GSM2442698
OSK-D3(ATAC-seq)-rep2
GSM2442699
OSK-D5(ATAC-seq)-rep1
GSM2442700
OSK-D5(ATAC-seq)-rep2
GSM2442701
OSK-D7-GFP-neg(ATAC-seq)-rep1
GSM2442702
OSK-D7-GFP-neg(ATAC-seq)-rep2
GSM2442703
OSK-D7-GFP-pos(ATAC-seq)-rep1
GSM2442704
OSK-D7-GFP-pos(ATAC-seq)-rep2
GSM2442705
OSK-D7(ATAC-seq)-rep1
GSM2442706
OSK-D7(ATAC-seq)-rep2
GSM2442707
OSK-DR-D0(ATAC-seq)-rep1
GSM2442708
OSK-DR-D0(ATAC-seq)-rep2
GSM2442709
OSK-DR-D1(ATAC-seq)-rep1
GSM2442710
OSK-DR-D1(ATAC-seq)-rep2
GSM2442711
OSK-DR-D3(ATAC-seq)-rep1
GSM2442712
OSK-DR-D3(ATAC-seq)-rep2
GSM2442713
OSK-DR-D7(ATAC-seq)-rep1
GSM2442714
OSK-DR-D7(ATAC-seq)-rep2
GSM2442715
OSK-scramble-D3
GSM2442716
OSK-scramble-D7
GSM2442717
OSK-shSap30#1-D3
GSM2442718
OSK-shSap30#1-D7
GSM2442719
OSK-shSap30#2-D3
GSM2442720
OSK-shSap30#2-D7
GSM2442721
S-D1(ATAC-seq)-rep1
GSM2442722
S-D1(ATAC-seq)-rep2
GSM2442723
SK-D1(ATAC-seq)-rep1
GSM2442724
SK-D1(ATAC-seq)-rep2
GSM2442725
ESCs(RNAseq)-rep1
GSM2442726
ESCs(RNAseq)-rep2
GSM2442727
iPS(RNAseq)-rep1
GSM2442728
iPS(RNAseq)-rep2
GSM2442729
MEF(RNAseq)-rep1
GSM2442730
MEF(RNAseq)-rep2
GSM2442731
OSK-cJun-D0(RNAseq)-rep1
GSM2442732
OSK-cJun-D0(RNAseq)-rep2
GSM2442733
OSK-cJun-D1(RNAseq)-rep1
GSM2442734
OSK-cJun-D1(RNAseq)-rep2
GSM2442735
OSK-cJun-D3(RNAseq)-rep1
GSM2442736
OSK-cJun-D3(RNAseq)-rep2
GSM2442737
OSK-cJun-D7(RNAseq)-rep1
GSM2442738
OSK-cJun-D7(RNAseq)-rep2
GSM2442739
OSK-D0(RNAseq)-rep1
GSM2442740
OSK-D0(RNAseq)-rep2
GSM2442741
OSK-D1(RNAseq)-rep1
GSM2442742
OSK-D1(RNAseq)-rep2
GSM2442743
OSK-D3(RNAseq)-rep1
GSM2442744
OSK-D3(RNAseq)-rep2
GSM2442745
OSK-D5(RNAseq)-rep1
GSM2442746
OSK-D5(RNAseq)-rep2
GSM2442747
OSK-D7(RNAseq)-rep1
GSM2442748
OSK-D7(RNAseq)-rep2
GSM2593530
OSK-shSap30-D7(RNAseq)-rep1
GSM2593531
OSK-shSap30-D7(RNAseq)-rep2
GSM2593532
ESCs-H3K27ac-Chipseq
GSM2593533
ESCs-input-Chipseq
GSM2593534
MEF-H3K27ac-Chipseq
GSM2593535
MEF-input-Chipseq
GSM2593536
OSK-D3-H3K27ac-Chipseq
GSM2593537
OSK-D3-input-Chipseq
GSM2593538
OSK-D7-H3K27ac-Chipseq
GSM2593539
OSK-D7-input-Chipseq
GSM2593540
OSK-Sap30-D3-input-Chipseq
GSM2593541
OSK-Sap30-D3-Chipseq
GSM2593542
OSK-Sap30-D7-input-Chipseq
GSM2593543
OSK-Sap30-D7-Chipseq
GSM2593544
OSK-Sin3a-D3-Chipseq
GSM2593545
OSK-Sin3a-D7-Chipseq
GSM2593546
OSK-scramble-D7-H3K27ac-Chipseq
GSM2593547
OSK-scramble-D7-input-Chipseq
GSM2593548
OSK-shSap30-D3-H3K27ac-Chipseq
GSM2593549
OSK-shSap30-D3-input-Chipseq
GSM2593550
OSK-shSap30-D7-H3K27ac-Chipseq
GSM2593551
OSK-shSap30-D7-input-Chipseq
GSM2741688
OSK-D3-GFP-neg(ATAC-seq)-rep3
GSM2741689
OSK-D3-GFP-neg(ATAC-seq)-rep4
GSM2742223
DsRed-D1(ATAC-seq)-rep1
GSM2742224
DsRed-D1(ATAC-seq)-rep2
This SuperSeries is composed of the following SubSeries:
GSE93026
Chromatin Open/Close Logic in Cellular Reprogramming [ATAC-Seq]
GSE93027
Chromatin Open/Close Logic in Cellular Reprogramming [RNA-Seq]
GSE98404
Chromatin Open/Close Logic in Cellular Reprogramming [ChIP-Seq]
Relations
BioProject
PRJNA359485
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE93029_RAW.tar
20.0 Gb
(http)
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TAR (of BED, BW)
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