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| Status |
Public on Jan 18, 2017 |
| Title |
De novo transcription analysis of Haloxylon ammodendron in response to osmotic stress |
| Organism |
Haloxylon ammodendron |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Purpose: To elucidate the potential molecular mechanisms that are involved in drought tolerance of Haloxylon ammodendron.
Method: Pathways and candidate genes drought-resistant genes were identified in shoots and roost of Haloxylon ammodendron under sorbitol treatment for 6 and 24h using RNA-seq and Digital Gene Expression.
Results: 3,353 differently expressed genes in shoots and 4,564 in roots were successfully indentified.
Conclusion: A detailed investigation of the pathways and candidate genes identified in this study promote the research on the molecular mechanisms of drought resistance in the xerophytic species, and lay a solid foundation for developing stress-tolerant forage and crop species by using excellent genes relevant to drought tolerance in Haloxylon. ammodendron.
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| Overall design |
RNA from shoots and roots of Haloxylon. ammodendron seedling treated with 0.4% sorbitol for 6 and 24h were sequenced.
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| Contributor(s) |
Zhang J, Gao H, Lv X, Zhang L |
| Citation(s) |
29286291 |
| Submission date |
Jan 17, 2017 |
| Last update date |
Aug 01, 2019 |
| Contact name |
Jinlin Zhang |
| E-mail(s) |
jlzhang@lzu.edu.cn
|
| Phone |
18794870914
|
| Organization name |
Lanzhou Univeisity
|
| Street address |
Tianshui South Road No.222
|
| City |
Lanzhou |
| ZIP/Postal code |
730000 |
| Country |
China |
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| Platforms (1) |
| GPL19524 |
Illumina HiSeq 2000 (Haloxylon ammodendron) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA361555 |
| SRA |
SRP096867 |
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