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Series GSE94836 Query DataSets for GSE94836
Status Public on Mar 05, 2018
Title BLIMP-1 is insufficient to induce antibody secretion in the absence of IRF4
Organism Gallus gallus
Experiment type Expression profiling by array
Summary Differentiation of B cells into antibody secreting cells (ASCs), plasmablasts and plasma cells, is regulated by a network of transcription factors. Within this network factors including PAX5 and BCL6 prevent ASC differentiation and maintain the B cell phenotype whereas BLIMP-1 and high IRF4 expression promote plasmacytic differentiation. BLIMP-1 is thought to induce immunoglobulin secretion. While IRF4 is needed for the survival of ASCs, its role in the regulation of antibody secretion has been controversial. BCL6-deficient DT40 B cell line has upregulated BLIMP-1 expression and secrete antibodies. In order to study the role of IRF4 in regulation of antibody secretion we have created a double knockout (DKO) DT40 B cell line deficient in both IRF4 and BCL6. This DKO cell line did not upregulate PRDM1 (the gene encoding for BLIMP-1) expression or secrete IgM. Even enforced BLIMP-1 expression in DKO cells or IRF4-deficient cells could not induce IgM secretion while it did in WT cells. However, enforced IRF4 expression in DKO cells induced strong IgM secretion. Our findings support a model where IRF4 expression in addition to BLIMP-1 expression is required to induce antibody secretion.
 
Overall design Gene expression profiles of BCL6 knockout (BCL6KO) and IRF4-BCL6 doubleknockout (DKO) chicken DT40 B cells were generated by Agilent Chicken Gene Expression Microarray V2.
 
Contributor(s) Budzynska PM, Kyläniemi MK
Citation(s) 29430664
Submission date Feb 13, 2017
Last update date Jun 05, 2018
Contact name Paulina Budzynska
Organization name University of Turku
Street address Kiinamyllynkatu 13
City Turku
ZIP/Postal code 20520
Country Finland
 
Platforms (1)
GPL15357 Agilent-026441 Gallus gallus (Chicken) Oligo Microarray v2 (Probe Name version)
Samples (8)
GSM2486336 BCL6KO DT40 B cells rep1
GSM2486337 BCL6KO DT40 B cells rep2
GSM2486338 DKO DT40 B cells rep1
Relations
BioProject PRJNA374575

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94836_RAW.tar 17.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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