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Series GSE99223 Query DataSets for GSE99223
Status Public on May 24, 2017
Title Transcriptional profiling defines histone acetylation as a regulator of gene expression during human-to-mosquito transmission of the malaria parasite Plasmodium falciparum
Organism Plasmodium falciparum
Experiment type Expression profiling by array
Summary Transmission of the malaria parasite Plasmodium falciparum from the human to the mosquito is mediated by the intraerythrocytic gametocytes, which, once taken up during a blood meal, become activated to initiate sexual reproduction. Because gametocytes are the only parasite stages able to establish an infection in the mosquito, they are crucial for spreading the tropical disease. During gametocyte maturation, different repertoires of genes are switched on and off in a well-coordinated sequence, pointing to regulatory mechanisms of gene expression. While epigenetic gene control has been studied during erythrocytic schizogony of P. falciparum, little is known about this process during parasite human-to-mosquito transmission of the parasite. To unveil the potential role of histone acetylation during gene expression in gametocytes, we carried out a microarray-based transcriptome analysis on gametocytes treated with the histone deacetylase inhibitor trichostatin A (TSA).
 
Overall design Plasmodium falciparum Percoll enriched immature (stages II-IV) gametocytes (imGC), mature (stage V) gametocytes (mGC) and gametocytes at 1 h post-activation with 100 µM Xanthurenic acid at RT (aGC) were obtained. Each enriched gametocyte sample was treated with TSA at IC90 concentrations (0.26 µM) or with 0.5% vol. ethanol (untreated control) for 1 h and 6 h, respectively and total RNA was isolated using the Trizol reagent (Invitrogen) according to the manufacturer’s protocol. The extracted RNA was then processed for microarray analysis.
 
Contributor(s) Ngwa CJ, Kiesow MJ, Papst O, Altenhofen LM, Filarsky M, Rosinski AN, Voss TS, Llinás M, Pradel G
Citation(s) 28791254
Submission date May 23, 2017
Last update date Jul 25, 2021
Contact name Manuel Llinas
E-mail(s) manuel@psu.edu
Phone 8148673444
Organization name Penn State University
Department Biochemistry and Molecular Biology
Lab Manuel Llinas Lab
Street address Millennium Science Complex, Pollock Rd
City University Park
State/province Pennsylvania
ZIP/Postal code 16802
Country USA
 
Platforms (1)
GPL15130 Agilent-037237 P.falciparum_Pf3D7v7.1_Transcriptome_apimito
Samples (12)
GSM2636264 Immature gametocytes untreated 1 h
GSM2636265 Immature gametocytes TSA-treated 1 h
GSM2636266 Immature gametocytes untreated 6 h
Relations
BioProject PRJNA387595

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99223_RAW.tar 35.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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