|
| Status |
Public on Sep 19, 2012 |
| Title |
UW_DnaseDgf_A20_immortalized |
| Sample type |
SRA |
| |
|
| Source name |
A20
|
| Organism |
Mus musculus |
| Characteristics |
lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: A20
cell organism: mouse
cell description: B cell lymphoma line derived from a spontaneous reticulum cell neoplasm
cell sex: M
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
labexpid: DS16695
labversion: Hotspot-v5.2
replicate: 1
strain: BALB/cAnN
strain description: ccMyeloma high incidence H2d
|
| Biomaterial provider |
ATCC
|
| Growth protocol |
A20_Stam_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE40869 |
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse] |
| GSE51341 |
Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence |
|
| Relations |
| SRA |
SRX188656 |
| BioSample |
SAMN01179403 |
| Named Annotation |
GSM1003829_mm9_wgEncodeUwDgfA20BalbcannMImmortalRawRep1.bigWig |
| Named Annotation |
GSM1003829_mm9_wgEncodeUwDgfA20BalbcannMImmortalSigRep1.bigWig |
