|
| Status |
Public on Sep 19, 2012 |
| Title |
UW_DnaseDgf_ES-CJ7_E0 |
| Sample type |
SRA |
| |
|
| Source name |
ES-CJ7
|
| Organism |
Mus musculus |
| Characteristics |
lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: ES-CJ7
cell organism: mouse
cell description: ES-cells were originally isolated from 129S1/SVImJ mice by Swiatek PJ et al. in 1993 ("Perinatal lethality and defects in hindbrain development in mice homozygous for a targeted mutation of the zinc finger gene Krox20". Swiatek PJ, Gridley T. Genes Dev. 1993 Nov,7(11):2071-84.)
cell sex: M
age: E0
age description: Embryonic day 0 (stem cell)
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: DS13320
labversion: Hotspot-v5.2
replicate: 1
strain: 129S1/SVImJ
strain description: Control inbred strain of the steel-derived ES cells.
|
| Biomaterial provider |
Stam lab
|
| Growth protocol |
ES-CJ7_Stam_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE40869 |
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse] |
| GSE51341 |
Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence |
|
| Relations |
| SRA |
SRX188657 |
| BioSample |
SAMN01179404 |
| Named Annotation |
GSM1003830_mm9_wgEncodeUwDgfEscj7129s1ME0RawRep1.bigWig |
| Named Annotation |
GSM1003830_mm9_wgEncodeUwDgfEscj7129s1ME0SigRep1.bigWig |
