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Sample GSM100458 Query DataSets for GSM100458
Status Public on Jun 07, 2006
Title MPI-006
Sample type RNA
 
Source name Frozen tissue
Organism Homo sapiens
Characteristics sample.ID : MPI-006
Relapse: no
Age : 14
Sex : female
Morphologic.diagnosis : DLBCL
CD20.expr. : present
CD10.expr. : present
bcl2.expr. : present
Ki.67.score : 90
CD5.expr. : absent
bcl6.expr. : NA
MYC.Partner : MYC-negative
BCL6.Break : absent
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 6
Genetic.Group : MYC.neg
AnnArbor.Stage : II
Lesions : nodal + extranodal
B.Symptoms : NA
Survival.Status : alive
FollowupTime..months. : 33
Radiotherapy : NA
RITUXIMAB : NA
Response.to.treatment : NA
Chemotherapy : NA
Molecular.Diagnosis : mBL
GCB.ABC.signature : GCB
Training.Test : Test
core.BL : no
BL.probability : 1
Extracted molecule total RNA
Label Biotin
 
Description Mature aggressive B-cell lymphoma
Data processing Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
 
Submission date Mar 15, 2006
Last update date Jun 07, 2006
Contact name Michael Hummel
Organization name Universitätsmedizin Berlin, Campus Benjamin Franklin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE4475 A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsin (log-like) scale

Data table
ID_REF VALUE
1007_s_at 9.0009266664106
1053_at 9.1024867458911
117_at 7.83189171709374
121_at 9.53980582046816
1255_g_at 6.51193300314284
1294_at 8.94100477712228
1316_at 7.04388503991427
1320_at 7.16270185112153
1405_i_at 8.32937935152262
1431_at 6.44989734617291
1438_at 7.9573017932183
1487_at 8.44414516548404
1494_f_at 7.85429779322947
1598_g_at 9.22416087335867
160020_at 8.84557291786055
1729_at 8.38873610522897
1773_at 7.57803843606788
177_at 7.48359142755145
179_at 9.84560035744977
1861_at 7.78209629060853

Total number of rows: 22283

Table truncated, full table size 604 Kbytes.




Supplementary file Size Download File type/resource
GSM100458.CEL.gz 3.4 Mb (ftp)(http) CEL

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