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Sample GSM107040

Query DataSets for GSM107040

Status

Public on Mar 05, 2007

Title

FVB/NJ periaqueductal gray rep2 (430 2.0 Array)

Sample type

RNA

Source name

periaqueductal gray

Organism

Mus musculus

Characteristics

Wild type 8 wk old male

Extracted molecule

total RNA

Extraction protocol

periaqueductal gray regions were dissected from two FVB/NJ mouse under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).

Label

biotin

Label protocol

10 µg of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Wild type 8 wk old male FVB/NJ mouse periaqueductal gray

Data processing

Lockhart-Barlow expression analysis algorithm

Submission date

Apr 28, 2006

Last update date

Mar 05, 2007

Contact name

Carrolee Barlow

Organization name

The Salk Institute for Biological Studies

Street address

10010 North Torrey Pines Road

City

La Jolla

State/province

ZIP/Postal code

92037

Country

USA

Platform ID

GPL1261

Series (1)

GSE4734

Mouse brain region gene expression (430 2.0 Array)

Data table header descriptions
ID_REF
VALUE	Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE	'detection p-value', p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS CALL	DETECTION P-VALUE
1415670_at	889.97	P	0.003311311
1415671_at	1524.14	P	0.003311311
1415672_at	1392.36	P	0.003311311
1415673_at	168.62	P	0.01
1415674_a_at	690.45	P	0.003311311
1415675_at	425.03	P	0.003311311
1415676_a_at	1769.91	P	0.003311311
1415677_at	379.19	P	0.003311311
1415678_at	1174.01	P	0.003311311
1415679_at	1086.22	P	0.003311311
1415680_at	266.03	P	0.003311311
1415681_at	612.69	P	0.003311311
1415682_at	390.24	P	0.003311311
1415683_at	833.9	P	0.003311311
1415684_at	218.76	P	0.003311311
1415685_at	229.19	P	0.003311311
1415686_at	1096.45	P	0.003311311
1415687_a_at	4202.24	P	0.003311311
1415688_at	781.51	P	0.003311311
1415689_s_at	198.29	P	0.003311311

Total number of rows: 45101

Table truncated, full table size 1372 Kbytes.

Supplementary data files not provided