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Sample GSM1109150 Query DataSets for GSM1109150
Status Public on Aug 17, 2014
Title week13-jak3i-2
Sample type RNA
 
Source name skin- week 12/13 tx
Organism Mus musculus
Characteristics treatment: jak3i
weeks of treatment: 12/13
strain: C3H/HeJ
tissue: skin
Extracted molecule total RNA
Extraction protocol Qiagen miRNeasy with on-column DNase digestion
Label biotin
Label protocol 3' IVT Express Kit, Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 7G3000.
Data processing The data were analyzed with Bioconductor/R and were RMA normalized.
 
Submission date Mar 27, 2013
Last update date Aug 17, 2014
Contact name Ali Jabbari
Organization name University of Iowa
Street address 200 Hawkins Dr, 40025 PFP
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE45551 Prevention of Mouse AA with IL-15 pathway inhibitors

Data table header descriptions
ID_REF
VALUE RMA normalized log2 (expression values)

Data table
ID_REF VALUE
1415670_at 9.78098197
1415671_at 11.23429525
1415672_at 11.60627116
1415673_at 9.773203423
1415674_a_at 10.0551188
1415675_at 9.513577797
1415676_a_at 11.15839532
1415677_at 9.793109828
1415678_at 11.01922886
1415679_at 11.51156087
1415680_at 9.676138793
1415681_at 10.21914604
1415682_at 8.856102191
1415683_at 11.24184198
1415684_at 9.333824765
1415685_at 8.668798254
1415686_at 10.82568907
1415687_a_at 12.37076352
1415688_at 11.3024311
1415689_s_at 9.900928899

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM1109150_W13.JAK3_19.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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