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Sample GSM1109154 Query DataSets for GSM1109154
Status Public on Aug 17, 2014
Title week13-jak12i-3
Sample type RNA
 
Source name skin- week 12/13 tx
Organism Mus musculus
Characteristics treatment: jak12i
weeks of treatment: 12/13
strain: C3H/HeJ
tissue: skin
Extracted molecule total RNA
Extraction protocol Qiagen miRNeasy with on-column DNase digestion
Label biotin
Label protocol 3' IVT Express Kit, Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 7G3000.
Data processing The data were analyzed with Bioconductor/R and were RMA normalized.
 
Submission date Mar 27, 2013
Last update date Aug 17, 2014
Contact name Ali Jabbari
Organization name University of Iowa
Street address 200 Hawkins Dr, 40025 PFP
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE45551 Prevention of Mouse AA with IL-15 pathway inhibitors

Data table header descriptions
ID_REF
VALUE RMA normalized log2 (expression values)

Data table
ID_REF VALUE
1415670_at 9.575115592
1415671_at 11.19469066
1415672_at 11.55526942
1415673_at 9.603735636
1415674_a_at 9.896544017
1415675_at 9.588712607
1415676_a_at 10.92966479
1415677_at 9.544409264
1415678_at 11.0503862
1415679_at 11.44186725
1415680_at 9.728675592
1415681_at 10.04662819
1415682_at 8.769971218
1415683_at 11.12962693
1415684_at 9.253668705
1415685_at 8.8984777
1415686_at 10.846951
1415687_a_at 12.60360681
1415688_at 11.21664692
1415689_s_at 10.20053291

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM1109154_W13.JAK12_372.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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