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Sample GSM112795 Query DataSets for GSM112795
Status Public on Sep 06, 2006
Title Neuroblastoma_primary_stage4S_NB10
Sample type SAGE
Anchor NlaIII
Tag Count 27217
Tag Length 10
 
Source name Neuroblastoma, primary tumor, stage 4S
Organism Homo sapiens
Characteristics Tissue: primary neuroblastoma, bulk
Stage: 4S
Age at diagnosis: 49 days
Sex: male
MYCN status: non-amplified
histology (INPC): stroma poor, poorly differentiated
Biomaterial provider University Children's Hospital of Cologne
Treatment protocol None
Growth protocol None
Extracted molecule total RNA
Extraction protocol RNA extraction: TRIzol reagent (Invitrogen)
SAGE library construction: I-SAGE kit (Invitrogen)
 
Description SAGE library of a primary stage 4S neuroblastoma without preceding cytotoxic treatment
Data processing SAGE2000 software, version 4.12
 
Submission date Jun 06, 2006
Last update date Nov 19, 2008
Contact name Matthias Fischer
E-mail(s) matthias.fischer@uk-koeln.de
Phone 0492214786816
Fax 0492214784689
Organization name University Children's Hospital
Department Pediatric Oncology
Street address Kerpener Str. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL4
Series (1)
GSE4991 Gene expression of disseminated neuroblastoma

Data table header descriptions
TAG Tag sequence
COUNT Tag count
TPM tags per million

Data table
TAG COUNT TPM
TAATAAAGGT 213 7825.99
GGGCTGGGGT 210 7715.77
GAGGGAGTTT 189 6944.19
CTGGGTTAAT 182 6687.00
TAGGTTGTCT 169 6209.35
TGCACGTTTT 167 6135.87
ATGTGAAGAG 146 5364.29
GCATAATAGG 146 5364.29
TGGAAATGAC 146 5364.29
TCAGATCTTT 141 5180.59
GGATTTGGCC 130 4776.43
ATAATTCTTT 127 4666.20
GTGAAACCCC 121 4445.75
AGGGCTTCCA 120 4409.01
ATTCTCCAGT 118 4335.53
TTCATACACC 111 4078.33
AAAAAAAAAA 109 4004.85
AGCACCTCCA 108 3968.11
GAAAAATGGT 105 3857.88
TTGGTCCTCT 101 3710.92

Total number of rows: 12473

Table truncated, full table size 233 Kbytes.




Supplementary data files not provided

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