|
| Status |
Public on Mar 05, 2014 |
| Title |
lymph node negative breast cancer 71 |
| Sample type |
RNA |
| |
|
| Source name |
Human breast cancer
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: breast cancer tissue
follow-up (months): 20
efous_2: no distant metastasis
tsize2: 2 cm or more
nottgrade: Grade 2
mai10: MAI under 10
h3_13: PPH3 under 13
her2_pos_neg: HER2 negative
er: ER positive
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with MirVANA total RNA isolation kit (Ambion/Applied Biosystems) according to the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
Sample 71
replicate 71
|
| Data processing |
The data were normalised using quantile normalisation with IlluminaGUI in R
|
| |
|
| Submission date |
May 01, 2013 |
| Last update date |
Mar 05, 2014 |
| Contact name |
Kristin Jonsdottir |
| E-mail(s) |
kristin_jonsd@hotmail.com
|
| Phone |
+4741631063
|
| Organization name |
Stavanger university Hospital
|
| Department |
Dep. of Pathology
|
| Lab |
Molecular biology lab
|
| Street address |
Torgveien 25b
|
| City |
Stavanger |
| ZIP/Postal code |
4016 |
| Country |
Norway |
| |
|
| Platform ID |
GPL6884 |
| Series (1) |
| GSE46563 |
Prognostic value of gene signatures and proliferation in lymph node negative breast cancer |
|
