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Sample GSM1140765 Query DataSets for GSM1140765
Status Public on Feb 13, 2014
Title iTreg_IL-2 [4233291007_F]
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics initial differentiation: CD45RA+
activation stimuli: CD3/28 + TGF + IL-2
time: 96h
donor: D13
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description T cell
Data processing The data were log2-transformed and normalized using quantile normalization with Partek Genomics Suite
 
Submission date May 14, 2013
Last update date Feb 13, 2014
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL6947
Series (2)
GSE46903 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation [Expression]
GSE47189 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation

Data table header descriptions
ID_REF
VALUE log2-transformed,quantile normalized
4233291007_F.Detection Pval

Data table
ID_REF VALUE 4233291007_F.Detection Pval
ILMN_1762337 6.3072 0.453228
ILMN_2055271 6.47875 0.0685112
ILMN_1736007 6.36534 0.283267
ILMN_2383229 6.26189 0.607378
ILMN_1806310 6.3559 0.306983
ILMN_1779670 6.39479 0.205534
ILMN_1653355 6.62553 0.0105402
ILMN_1717783 6.16529 0.895916
ILMN_1705025 6.33148 0.380764
ILMN_1814316 6.17926 0.873518
ILMN_2359168 6.26583 0.594203
ILMN_1731507 6.23857 0.700922
ILMN_1787689 6.46616 0.0843215
ILMN_1745607 6.21951 0.766798
ILMN_2136495 6.17683 0.87747
ILMN_1668111 6.18814 0.860343
ILMN_2295559 6.2201 0.765481
ILMN_1735045 6.29163 0.509881
ILMN_1680754 6.30117 0.474308
ILMN_2375184 6.32343 0.399209

Total number of rows: 47463

Table truncated, full table size 1331 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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