NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1152892 Query DataSets for GSM1152892
Status Public on Jun 20, 2013
Title Sendai Virus Infected with miR-203 Mimic Replicate 2
Sample type RNA
 
Source name A549 cells
Organism Homo sapiens
Characteristics cell line: A549
infection: Sendai virus
Extracted molecule total RNA
Extraction protocol Total RNA was purified using Qiagen's miRNEasy Kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description A549 cells were transfected with 50nM miR-203 mimic using Lipofectamine 2000. Fifteen hours after transfection, cells were infected with Sendai virus (Cantell strain, 5 pfu/cell) for 10 hours prior to RNA purification.
Data processing quantile normalization
 
Submission date Jun 03, 2013
Last update date Jun 20, 2013
Contact name William Buggele
Organization name Northwestern University
Street address 2200 Campus Dr.
City Evanston
State/province IL
ZIP/Postal code 60208
Country USA
 
Platform ID GPL10558
Series (1)
GSE47865 Identification of miR-203 Regulated Genes During Sendai Virus Infection

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 Ku8QhfS0n_hIOABXuE 7.01009754857976 90.59451 10.0090214444296 0.648052 19
ILMN_2055271 fqPEquJRRlSVSfL.8A 7.09620739710755 99.20813 5.09116098969852 0.08311688 13
ILMN_1736007 ckiehnugOno9d7vf1Q 7.01201700052329 90.78831 11.79263990325 0.6324675 21
ILMN_2383229 x57Vw5B5Fbt5JUnQkI 7.07294338136447 96.86732 14.0460684878342 0.1597403 17
ILMN_1806310 ritxUH.kuHlYqjozpE 7.11521672726159 101.0766 10.6031354803568 0.04415584 18
ILMN_1779670 QpE5UiUgmJOJEkPXpc 7.04537793006486 94.10764 17.5780362136958 0.3272727 17
ILMN_1653355 EedxN6XeUOgPSCywB0 7.00988040752525 90.57258 11.1503267996978 0.6493506 15
ILMN_1717783 ZtOcIegchMOATSJScI 6.99638578018944 89.26629 11.1225269581365 0.7545455 26
ILMN_1705025 3l3lDoD0gssAdeehIY 7.00610524049986 90.21818 16.1505884246191 0.6844156 15
ILMN_1814316 WS4S8aGL855YVcUUZE 6.99111377150315 88.75089 11.279544 0.7922078 16
ILMN_2359168 KS8aGL855YVcUUZH50 6.9986235694498 89.49019 12.0640201191653 0.738961 26
ILMN_1731507 HA0vbfb5JI4D9_wRd4 6.99070111388319 88.71279 9.50143715858148 0.7961039 17
ILMN_1787689 TdSfOuLunqrkiJkag8 7.03444804441887 92.98492 14.2191458864513 0.4311688 24
ILMN_3241953 Bx496XsFXiAlj.Eaeo 7.29337103854253 119.9199 20.5431899568801 0 19
ILMN_1745607 ZfoDn4IUQp4Auf56LU 6.9976146743059 89.37747 13.1121038961799 0.7441558 24
ILMN_2136495 97DZJV_gpQpKINl0Ec 6.99121482349191 88.75996 10.4735531817478 0.7922078 29
ILMN_1668111 r33p5EJWUK57ZWL3no 6.99214146567273 88.85971 13.1236203136104 0.7831169 23
ILMN_2295559 HO95OhuhSR9JpH.qVg 7.03464629201851 93.0099 13.0142661731975 0.4272727 13
ILMN_1735045 W38p0ogk.wIBVRXllY 7.70382757469889 173.5021 23.3020241836776 0 17
ILMN_1680754 QUTgUoqmp7jyKCQRHo 7.12585834246494 102.0909 23.9511546781699 0.02727273 20

Total number of rows: 47322

Table truncated, full table size 3912 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap